A Simple Mathematical Model of Adaptation to High Osmolarity in Yeast. - Peter Gennemark; Bodil Nordlander; Stefan Hohmann; Dag Wedelin (Silico Biol., 2006)

Improved Parameter Estimation for Completely Observed Ordinary Differential Equations with Application to Biological Systems. - Peter Gennemark; Dag Wedelin (CMSB, 2009)

Benchmarks for identification of ordinary differential equations from time series data. - Peter Gennemark; Dag Wedelin (Bioinform., 2009)

Structural identification of GMA models: algorithm and model comparison. - Graciano Dieck Kattas; Peter Gennemark; Dag Wedelin (CMSB, 2010)

Modeling yeast Osmoadaptation at Different Levels of Resolution. - Clemens Kühn; Peter Gennemark (J. Bioinform. Comput. Biol., 2013)

Odeion - a Software Module for Structural Identification of Ordinary differential equations. - Peter Gennemark; Dag Wedelin (J. Bioinform. Comput. Biol., 2014)

Automated analysis of routinely generated preclinical pharmacokinetic and pharmacodynamic data. - Emma Lindhardt; Peter Gennemark (J. Bioinform. Comput. Biol., 2014)

PopED lite: An optimal design software for preclinical pharmacokinetic and pharmacodynamic studies. - Yasunori Aoki; Monika Sundqvist; Andrew C. Hooker; Peter Gennemark (Comput. Methods Programs Biomed., 2016)

Digital twin predicting diet response before and after long-term fasting. - Oscar Silfvergren; Christian Simonsson; Mattias Ekstedt; Peter Lundberg; Peter Gennemark; Gunnar Cedersund (PLoS Comput. Biol., 2022)

Integrated experimental-computational analysis of a HepaRG liver-islet microphysiological system for human-centric diabetes research. - Belén Casas; Liisa Vilén; Sophie Bauer; Kajsa P. Kanebratt; Charlotte Wennberg Huldt; Lisa Magnusson; Uwe Marx; Tommy B. Andersson; Peter Gennemark; Gunnar Cedersund (PLoS Comput. Biol., 2022)

Diffusive Molecular Communication with a Spheroidal Receiver for Organ-on-Chip Systems. - Hamidreza Arjmandi; Mohammad Zoofaghari; Mitra Rezaei; Kajsa P. Kanebratt; Liisa Vilén; David Janzén; Peter Gennemark; Adam Noel (ICC, 2023)

Spheroidal Molecular Communication via Diffusion: Signaling Between Homogeneous Cell Aggregates. - Mitra Rezaei; Hamidreza Arjmandi; Mohammad Zoofaghari; Kajsa P. Kanebratt; Liisa Vilén; David Janzén; Peter Gennemark; Adam Noel (IEEE Trans. Mol. Biol. Multi Scale Commun., 2024)