A study on the effect of different thermodynamic models for predicting pseudoknotted RNA secondary structures. - Peter Grypma; Jonathan Babbitt; Herbert H. Tsang (CIBCB, 2013)

SARNA-Predict: Using adaptive annealing schedule and inversion mutation operator for RNA secondary structure prediction. - Peter Grypma; Herbert H. Tsang (MCDM, 2014)