PatchPerPix for Instance Segmentation. - Lisa Mais; Peter Hirsch 001; Dagmar Kainmueller (ECCV (25), 2020)

An Auxiliary Task for Learning Nuclei Segmentation in 3D Microscopy Images. - Peter Hirsch 001; Dagmar Kainmueller (MIDL, 2020)

How Shift Equivariance Impacts Metric Learning for Instance Segmentation. - Josef Lorenz Rumberger; Xiaoyan Yu; Peter Hirsch 001; Melanie Dohmen; Vanessa Emanuela Guarino; Ashkan Mokarian; Lisa Mais; Jan Funke; Dagmar Kainmueller (ICCV, 2021)

Tracking by Weakly-Supervised Learning and Graph Optimization for Whole-Embryo C. elegans lineages. - Peter Hirsch 001; Caroline Malin-Mayor; Anthony Santella; Stephan Preibisch; Dagmar Kainmueller; Jan Funke (MICCAI (4), 2022)

Panoptic segmentation with highly imbalanced semantic labels. - Josef Lorenz Rumberger; Elias Baumann; Peter Hirsch 001; Dagmar Kainmueller (CoRR, 2022)

ACTIS: Improving data efficiency by leveraging semi-supervised Augmentation Consistency Training for Instance Segmentation. - Josef Lorenz Rumberger; Jannik Franzen; Peter Hirsch 001; Jan Philipp Albrecht; Dagmar Kainmueller (ICCV (Workshops), 2023)

CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting. - Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Martin Weigert 001; Uwe Schmidt; Wenhua Zhang; Jun Zhang 018; Sen Yang 006; Jinxi Xiang; Xiyue Wang; Josef Lorenz Rumberger; Elias Baumann; et al. (CoRR, 2023)

Segmentation and Tracking of Cells and Nuclei Using Deep Learning. - Peter Hirsch 001 (2023)

FISBe: A Real-World Benchmark Dataset for Instance Segmentation of Long-Range thin Filamentous Structures. - Lisa Mais; Peter Hirsch 001; Claire Managan; Ramya Kandarpa; Josef Lorenz Rumberger; Annika Reinke; Lena Maier-Hein; Gudrun Ihrke; Dagmar Kainmueller (CVPR, 2024)

CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. - Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Martin Weigert 001; Uwe Schmidt; Wenhua Zhang; Jun Zhang 018; Sen Yang 006; Jinxi Xiang; Xiyue Wang; Josef Lorenz Rumberger; Elias Baumann; et al. (Medical Image Anal., 2024)

FISBe: A real-world benchmark dataset for instance segmentation of long-range thin filamentous structures. - Lisa Mais; Peter Hirsch 001; Claire Managan; Ramya Kandarpa; Josef Lorenz Rumberger; Annika Reinke; Lena Maier-Hein; Gudrun Ihrke; Dagmar Kainmueller (Zenodo, 2024)