SmartQuery: context-sensitive links to medical knowledge sources from the electronic patient record. - Susan L. Price; William R. Hersh; Daniel Olson; Peter J. Embí (AMIA, 2002)

Research Paper: Impacts of Computerized Physician Documentation in a Teaching Hospital: Perceptions of Faculty and Resident Physicians. - Peter J. Embí; Thomas R. Yackel; Judith R. Logan; Judith L. Bowen; Thomas G. Cooney; Paul N. Gorman (J. Am. Medical Informatics Assoc., 2004)

Development of an Electronic Health Record-based Clinical Trial Alert System to Enhance Recruitment at the Point of Care. - Peter J. Embí; Anil K. Jain 004; Jeffrey Clark; C. Martin Harris (AMIA, 2005)

Physician Perceptions of an Electronic Health Record-based Clinical Trial Alert System: A Survey of Study Participants. - Peter J. Embí; Anil K. Jain 004; C. Martin Harris (AMIA, 2005)

NetWellness 1995 - 2005: Ten Years of Experience and Growth as a NonProfit Consumer Health Information and Ask-an-Expert Service. - Stephen A. Marine; Peter J. Embí; Mark McCuistion; Doris Haag; J. Roger Guard (AMIA, 2005)

Preferences Regarding the Computerized Delivery of Lecture Content: A Survey of Medical Students. - Peter J. Embí; Paul W. Biddinger; Linda M. Goldenhar; Leslie Schick; Birsen Kaya; Justin D. Held (AMIA, 2006)

Impacts of PDA-based Access to Clinical Data in a Teaching Hospital: Perceptions of Housestaff Physicians. - Danesh Mazloomdoost; Peter J. Embí (AMIA, 2006)

Identifying Challenges and Opportunities in Clinical Research Informatics: Analysis of a Facilitated Discussion at the 2006 AMIA Annual Symposium. - Peter J. Embí; Philip R. O. Payne; Stanley E. Kaufman; Judith R. Logan; Charles E. Barr (AMIA, 2007)

Perceived Barriers to Information Access Among Medical Residents in Iran: Obstacles to Answering Clinical Queries in Settings with Limited Internet Accessibility. - Danesh Mazloomdoost; Shervineh Mehregan; Hilda Mahmoudi; Akbar Soltani; Peter J. Embí (AMIA, 2007)

Effect of a Computerized Provider Order Entry (CPOE) System on Medication Orders at a Community Hospital and University Hospital. - Mark L. Wess; Peter J. Embí; James L. Besier; Chad H. Lowry; Paul F. Anderson; James C. Besier; Geriann Thelen; Catherine Hegner (AMIA, 2007)

White Paper: A Code of Professional Ethical Conduct for the American Medical Informatics Association: An AMIA Board of Directors Approved White Paper. - John F. Hurdle; Samantha A. Adams; Jane M. Brokel; Betty Chang; Peter J. Embí; Carolyn Petersen; Enrique Terrazas; Peter Winkelstein (J. Am. Medical Informatics Assoc., 2007)

Physicians' perceptions of an electronic health record-based clinical trial alert approach to subject recruitment: A survey. - Peter J. Embí; Anil K. Jain 004; C. Martin Harris (BMC Medical Informatics Decis. Mak., 2008)

Research Paper: Clinical Research Informatics: Challenges, Opportunities and Definition for an Emerging Domain. - Peter J. Embí; Philip R. O. Payne (J. Am. Medical Informatics Assoc., 2009)

Foundational biomedical informatics research in the clinical and translational science era: a call to action. - Philip R. O. Payne; Peter J. Embí; Joyce C. Niland (J. Am. Medical Informatics Assoc., 2010)

Case report: Unintended errors with EHR-based result management: a case series. - Thomas R. Yackel; Peter J. Embí (J. Am. Medical Informatics Assoc., 2010)

Preliminary Validation of a Method to Measure Information Value in Clinical Documentation. - Kenric W. Hammond; Efthimis N. Efthimiadis; Ryan Laundry; Stephen M. Thielke; Charlene R. Weir; Peter J. Embí; Ashley N. Hedeen (HICSS, 2011)

An exploration of the impact of computerized patient documentation on clinical collaboration. - Charlene R. Weir; Kenric W. Hammond; Peter J. Embí; Efthimis N. Efthimiadis; Stephen M. Thielke; Ashley N. Hedeen (Int. J. Medical Informatics, 2011)

Selected Papers from the 2011 Summit on Clinical Research Informatics. - Philip R. O. Payne; Peter J. Embí; Michael G. Kahn (J. Biomed. Informatics, 2011)

Computerized Provider Documentation: Impact and Implications for Healthcare Practice, Quality, and Research in the Meaningful Use Era. - Peter J. Embí; Charlene R. Weir; Kenric W. Hammond; Samuel Rosenbloom (AMIA, 2012)

Development of an Informatics-Based Predictive Model for 30-Day Readmission Customized for a Single Hospital System. - Courtney Hebert; Jared Wasserman; Randi E. Foraker; Stanley Lemeshow; Hagop S. Mekhjian; Philip R. O. Payne; Peter J. Embí (AMIA, 2012)

Time Capture Tool (TimeCaT): Development of a Comprehensive Application to Support Data Capture for Time Motion Studies. - Marcelo A. Lopetegui; Po-Yin Yen; Albert M. Lai; Peter J. Embí; Philip R. O. Payne (AMIA, 2012)

Evaluating alert fatigue over time to EHR-based clinical trial alerts: findings from a randomized controlled study. - Peter J. Embí; Anthony C. Leonard (J. Am. Medical Informatics Assoc., 2012)

Computational challenges and human factors influencing the design and use of clinical research participant eligibility pre-screening tools. - Taylor R. Pressler; Po-Yin Yen; Jing Ding; Jianhua Liu; Peter J. Embí; Philip R. O. Payne (BMC Medical Informatics Decis. Mak., 2012)

The Computerized Research Record (CoRR): A Web-based Research Record System for Managing Research Support Requests Based on an EHR Metaphor. - Peter J. Embí; Marcelo A. Lopetegui; Frank Lamantia; Tara Borlawsky; Douglas Hamon; Tome Nielsen; Robert Rice (AMIA, 2013)

Inter-Observer Reliability Assessments in Time Motion Studies: The Foundation for Meaningful Clinical Workflow Analysis. - Marcelo A. Lopetegui; Shasha Bai; Po-Yin Yen; Albert M. Lai; Peter J. Embí; Philip R. O. Payne (AMIA, 2013)

Informatics Challenges and the Future of Electronic Clinical Documentation. - David K. Vawdrey; S. Trent Rosenbloom; Peter D. Stetson; Thomas H. Payne; Peter J. Embí (AMIA, 2013)

Research Informatics : Re-engineering the Research Enterprise. - Mark G. Weiner; Philip R. O. Payne; Peter J. Embí; Shawn N. Murphy (AMIA, 2013)

TimeCaT: a Comprehensive Tool for Time Motion Studies. - Marcelo A. Lopetegui; Po-Yin Yen; Albert M. Lai; Peter J. Embí; Philip R. O. Payne (MedInfo, 2013)

Integrating Population- and Patient-Level Data for Secondary Use of Electronic Health Records to Study Overweight and Obesity. - Caryn Roth; Chaitanya P. Shivade; Randi E. Foraker; Peter J. Embí (MedInfo, 2013)

Research and applications: Computerized provider documentation: findings and implications of a multisite study of clinicians and administrators. - Peter J. Embí; Charlene R. Weir; Efthimis N. Efthimiadis; Stephen M. Thielke; Ashley N. Hedeen; Kenric W. Hammond (J. Am. Medical Informatics Assoc., 2013)

AMIA's Code of Professional and Ethical Conduct. - Kenneth W. Goodman; Samantha A. Adams; Eta S. Berner; Peter J. Embí; Robert C. Hsiung; John F. Hurdle; Dixie A. Jones; Christoph U. Lehmann; Sarah A. Maulden; Carolyn Petersen; Enrique Terrazas; Peter Winkelstein (J. Am. Medical Informatics Assoc., 2013)

Admission data predict risk as well as discharge data in patients with pneumonia: A readmission risk-model evaluation. - Courtney Hebert; Peter J. Embí (AMIA, 2014)

Challenges Faced When Designing and Conducting Time Motion Studies in Health Care Environments. - Barbara A. Lara; Meara Alexa; Stacy Ardoin; Peter J. Embí; Po-Yin Yen (AMIA, 2014)

Identifying Clinical Decision Support Failures using Change-point Detection. - Adam Wright; Francine L. Maloney; Rachel B. Ramoni; Milos Hauskrecht; Peter J. Embí; Pamela M. Neri; Dean F. Sittig; David W. Bates (AMIA, 2014)

Health data use, stewardship, and governance: ongoing gaps and challenges: a report from AMIA's 2012 Health Policy Meeting. - George Hripcsak; Meryl Bloomrosen; Patti Flatley Brennan; Christopher G. Chute; James J. Cimino; Don E. Detmer; Margo Edmunds; Peter J. Embí; Melissa M. Goldstein; William Ed Hammond; Gail M. Keenan; Steven E. Labkoff; et al. (J. Am. Medical Informatics Assoc., 2014)

A review of approaches to identifying patient phenotype cohorts using electronic health records. - Chaitanya P. Shivade; Preethi Raghavan; Eric Fosler-Lussier; Peter J. Embí; Noémie Elhadad; Stephen B. Johnson; Albert M. Lai (J. Am. Medical Informatics Assoc., 2014)

Advancing methodologies in Clinical Research Informatics (CRI): Foundational work for a maturing field. - Peter J. Embí; Philip R. O. Payne (J. Biomed. Informatics, 2014)

Time motion studies in healthcare: What are we talking about? - Marcelo A. Lopetegui; Po-Yin Yen; Albert M. Lai; Joseph Jeffries; Peter J. Embí; Philip R. O. Payne (J. Biomed. Informatics, 2014)

Federated Aggregate Cohort Estimator (FACE): An easy to deploy, vendor neutral, multi-institutional cohort query architecture. - Matthew C. Wyatt; R. Curtis Hendrickson; Michael Ames; Jessica Bondy; Paul Ranauro; Thomas M. English; Keith Bobitt; Arthur Davidson; Thomas K. Houston; Peter J. Embí; Eta S. Berner (J. Biomed. Informatics, 2014)

Diagnosis-specific readmission risk prediction using electronic health data: a retrospective cohort study. - Courtney Hebert; Chaitanya P. Shivade; Randi E. Foraker; Jared Wasserman; Caryn Roth; Hagop S. Mekhjian; Stanley Lemeshow; Peter J. Embí (BMC Medical Informatics Decis. Mak., 2014)

Community-level determinants of obesity: harnessing the power of electronic health records for retrospective data analysis. - Caryn Roth; Randi E. Foraker; Philip R. O. Payne; Peter J. Embí (BMC Medical Informatics Decis. Mak., 2014)

High Level Architecture and Evaluation of Patient Linkages for READY - An Electronic Measurement Tool for Rheumatoid Arthritis. - Puneet Mathur; Leslie A. Southern; Aseem Bharat; Shunchao Wang; Chris Heckler; Omkar Lele; Peter J. Embí; Jeffrey R. Curtis (AMIA, 2015)

Design of a Scalable and Affordable Local Research Registry Pipeline. - Puneet Mathur; Kim Leonard; Jeremy R. Harper; Joshua Yoder; Omkar Lele; Peter J. Embí (CRI, 2016)

Delivering Integrated Research Registries in Academic Health Centers. - Leon Rozenblit; Peter J. Embí; Ian Brooks; Rony Jose; Monika Ahuja; Thomas R. Campion Jr. (CRI, 2016)

Usability and Workflow Evaluation of "RhEumAtic Disease activitY" (READY). - Po-Yin Yen; Barbara A. Lara; Marcelo A. Lopetegui; Aseem Bharat; Stacy Ardoin; Bernadette Johnson; Puneet Mathur; Peter J. Embí; Jeffrey R. Curtis (Appl. Clin. Inform., 2016)

Rethinking the role and impact of health information technology: informatics as an interventional discipline. - Philip R. O. Payne; Yves A. Lussier; Randi E. Foraker; Peter J. Embí (BMC Medical Informatics Decis. Mak., 2016)

A Scalable Approach to Federating Distributed Data: The Avec® Platform. - Philip R. O. Payne; Mark Vance; Peter J. Embí (AMIA, 2017)

Developing Governance Structures for Informatics Approaches to Research Recruitment. - Michael Cantor; Peter J. Embí; Allen Hsiao (CRI, 2017)

Maturity Models for Research IT and Informatics - Reports from the Field. - Boyd M. Knosp; William K. Barnett; Peter J. Embí; Nick R. Anderson 001 (CRI, 2017)

Understanding the Role of Technology for Screening Participants in Clinical Studies. - En-Ju D. Lin; Stephen B. Johnson; Chaitanya Shivade; Peter J. Embí; Albert M. Lai (CRI, 2017)

Methods for Detecting Malfunctions in Clinical Decision Support Systems. - Adam Wright; Trang T. Hickman; Dustin McEvoy; Skye Aaron; Angela Ai; Joan S. Ash; Jan Marie Andersen; Rachel Badovinac Ramoni; Milos Hauskrecht; Peter J. Embí; Richard Schreiber; Dean F. Sittig; et al. (MedInfo, 2017)

The Emerging Role of the Chief Research Informatics Officer in Academic Health Centers. - Abu Saleh Mohammad Mosa; Kate Fultz Hollis; Umberto Tachinardi; William K. Barnett; L. Nelson Sanchez-Pinto; Peter J. Embí (Appl. Clin. Inform., 2017)

Crossing the health IT chasm: considerations and policy recommendations to overcome current challenges and enable value-based care. - Julia Adler-Milstein; Peter J. Embí; Blackford Middleton; Indra Neil Sarkar; Jeff Smith (J. Am. Medical Informatics Assoc., 2017)

Developing the Indiana Learning Health System Initiative. - Titus K. Schleyer; Christopher Callahan; Linda Williams; Douglas Martin; Jonathan Gottlieb; Christopher Frederick; Peter J. Embí (AMIA, 2018)

AMIA's code of professional and ethical conduct 2018. - Carolyn Petersen; Eta S. Berner; Peter J. Embí; Kate Fultz Hollis; Kenneth W. Goodman; Ross Koppel; Christoph U. Lehmann; Harold P. Lehmann; Sarah A. Maulden; Kyle A. McGregor; Anthony Solomonides; Vignesh Subbian; et al. (J. Am. Medical Informatics Assoc., 2018)

Clinical decision support alert malfunctions: analysis and empirically derived taxonomy. - Adam Wright; Angela Ai; Joan S. Ash; Jane Wiesen; Thu-Trang T. Hickman; Skye Aaron; Dustin McEvoy; Shane Borkowsky; Pavithra I. Dissanayake; Peter J. Embí; William L. Galanter; Jeremy Harper; et al. (J. Am. Medical Informatics Assoc., 2018)

An information infrastructure for federated, person-level linkage and query capability across private- and public-sector health data: The Indiana state EMS to HIE ED pilot project. - Daniel Hood; Shaun J. Grannis; Peter J. Embí; Josh Martin; Darshan Shah; John Roach; Katie Allen (AMIA, 2019)

Foundations for Studying Clinical Workflow: Development of a Composite Inter-Observer Reliability Assessment for Workflow Time Studies. - Marcelo A. Lopetegui; Po-Yin Yen; Philip R. O. Payne; Peter J. Embí (AMIA, 2019)

Transforming primary medical research knowledge into clinical decision support rules. - Paul R. Dexter; Randall W. Grout; Peter J. Embí (AMIA, 2020)

Daily Visualization of Statewide COVID-19 Healthcare Data. - Brian E. Dixon; Shaun J. Grannis; Umberto Tachinardi; Jennifer L. Williams; Connor McAndrews; Peter J. Embí (VAHC, 2020)

Extracting Social Variables from Clinical Documentation to Better Facilitate Response to Patient Need. - Katie Allen; Daniel Hood; Jonathan Cummins; Suranga Nath Kasthurirathne; Peter J. Embí; Joshua R. Vest (AMIA, 2021)

Development and Global Use of a Platform-Independent Mobile App to Enable Citizen-Scientist Data Collection on Mask-Wearing. - Peter J. Embí; Marcelo A. Lopetegui; Joshua R. Vest (AMIA, 2021)

Leveraging data visualization and a statewide health information exchange to support COVID-19 surveillance and response: Application of public health informatics. - Brian E. Dixon; Shaun J. Grannis; Connor McAndrews; Andrea A. Broyles; Waldo Mikels-Carrasco; Ashley Wiensch; Jennifer L. Williams; Umberto Tachinardi; Peter J. Embí (J. Am. Medical Informatics Assoc., 2021)

Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. - Subha Madhavan; Lisa Bastarache; Jeffrey S. Brown; Atul J. Butte; David A. Dorr; Peter J. Embí; Charles P. Friedman; Kevin B. Johnson; Jason H. Moore; Isaac S. Kohane; Philip R. O. Payne; Jessica D. Tenenbaum; et al. (J. Am. Medical Informatics Assoc., 2021)

Dobbs and the future of health data privacy for patients and healthcare organizations. - Ellen Wright Clayton; Peter J. Embí; Bradley A. Malin (J. Am. Medical Informatics Assoc., 2022)

ChatGPT and the clinical informatics board examination: the end of unproctored maintenance of certification? - Yaa A. Kumah-Crystal; Scott Mankowitz; Peter J. Embí; Christoph U. Lehmann (J. Am. Medical Informatics Assoc., 2023)

Sustainable deployment of clinical prediction tools - a 360° approach to model maintenance. - Sharon E. Davis; Peter J. Embí; Michael E. Matheny (J. Am. Medical Informatics Assoc., 2024)

Improving reporting standards for phenotyping algorithm in biomedical research: 5 fundamental dimensions. - Wei-Qi Wei; Robb Rowley; Angela M. Wood; Jacqueline Macarthur; Peter J. Embí; Spiros C. Denaxas (J. Am. Medical Informatics Assoc., 2024)

Leveraging generative AI to prioritize drug repurposing candidates for Alzheimer's disease with real-world clinical validation. - Chao Yan 004; Monika E. Grabowska; Alyson L. Dickson; Bingshan Li; Zhexing Wen; Dan M. Roden; C. Michael Stein; Peter J. Embí; Josh F. Peterson; QiPing Feng; Bradley A. Malin; Wei-Qi Wei (npj Digit. Medicine, 2024)

Opportunities for the informatics community to advance learning health systems. - Melissa Gunderson; Peter J. Embí; Charles P. Friedman; Genevieve B. Melton (J. Am. Medical Informatics Assoc., 2025)

Toward an artificial intelligence code of conduct for health and healthcare: implications for the biomedical informatics community. - Philip R. O. Payne; Kevin B. Johnson; Thomas M. Maddox; Peter J. Embí; Kenneth D. Mandl; Deven McGraw; Suchi Saria; Laura Adams (J. Am. Medical Informatics Assoc., 2025)

Beyond Phecodes: leveraging PheMAP to identify patients lacking diagnosis codes in electronic health records. - Chao Yan 004; Monika E. Grabowska; Rut Thakkar; Alyson L. Dickson; Peter J. Embí; QiPing Feng; Joshua C. Denny; Vern Eric Kerchberger; Bradley A. Malin; Wei-Qi Wei (J. Am. Medical Informatics Assoc., 2025)