ReseqChip: Automated integration of multiple local context probe data from the MitoChip array in mitochondrial DNA sequence assembly. - Marian Thieme; Claudio Lottaz; Harald Niederstätter; Walther Parson; Rainer Spang; Peter J. Oefner (BMC Bioinform., 2009)

Causal Modeling of Cancer-Stromal Communication Identifies PAPPA as a Novel Stroma-Secreted Factor Activating NFκB Signaling in Hepatocellular Carcinoma. - Julia C. Engelmann; Thomas Amann; Birgitta Ott-Rötzer; Margit Nützel; Yvonne Reinders; Jörg Reinders; Wolfgang E. Thasler; Theresa Kristl; Andreas Teufel; Christian G. Huber; Peter J. Oefner; Rainer Spang; et al. (PLoS Comput. Biol., 2015)

An Overview of Myocardial Infarction Registries and Results from the Hungarian Myocardial Infarction Registry. - Peter Piros; Rita Fleiner; Tamas Ferenci; Péter Andréka; Hamido Fujita; Peter J. Oefner; Levente Kovács; András Jánosi (SoMeT, 2017)

Reference point insensitive molecular data analysis. - Michael Altenbuchinger; Thorsten Rehberg; Helena U. Zacharias; Frank Stämmler; K. Dettmer; D. Weber; Andreas Hiergeist; A. Gessner; E. Holler; Peter J. Oefner; Rainer Spang (Bioinform., 2017)

Molecular signatures that can be transferred across different omics platforms. - Michael Altenbuchinger; Philipp Schwarzfischer; Thorsten Rehberg; Jörg Reinders; Christian W. Kohler; Wolfram Gronwald; Julia Richter; Monika Szczepanowski; Neus Masqué-Soler; Wolfram Klapper; Peter J. Oefner; Rainer Spang (Bioinform., 2017)

Loss-Function Learning for Digital Tissue Deconvolution. - Franziska Görtler; Stefan Solbrig; Tilo Wettig; Peter J. Oefner; Rainer Spang; Michael Altenbuchinger (RECOMB, 2018)

Loss-Function Learning for Digital Tissue Deconvolution. - Franziska Görtler; Marian Schön; Jakob Simeth; Stefan Solbrig; Tilo Wettig; Peter J. Oefner; Rainer Spang; Michael Altenbuchinger (J. Comput. Biol., 2020)

DTD: An R Package for Digital Tissue Deconvolution. - Marian Schön; Jakob Simeth; Paul Heinrich; Franziska Görtler; Stefan Solbrig; Tilo Wettig; Peter J. Oefner; Michael Altenbuchinger; Rainer Spang (J. Comput. Biol., 2020)

BITES: balanced individual treatment effect for survival data. - Stefan Schrod; Andreas Schäfer 005; Stefan Solbrig; Robert Lohmayer; Wolfram Gronwald; Peter J. Oefner; Tim Beißbarth; Rainer Spang; Helena U. Zacharias; Michael Altenbuchinger (Bioinform., 2022)

Anomaly detection in mixed high-dimensional molecular data. - Lena Buck; Tobias Schmidt; Maren Feist; Philipp Schwarzfischer; Dieter Kube; Peter J. Oefner; Helena U. Zacharias; Michael Altenbuchinger; Katja Dettmer; Wolfram Gronwald; Rainer Spang (Bioinform., 2023)

SpaCeNet: Spatial Cellular Networks from Omics Data. - Stefan Schrod; Niklas Lück; Robert Lohmayer; Stefan Solbrig; Tina Wipfler; Katherine H. Shutta; Marouen Ben Guebila; Andreas Schäfer 005; Tim Beißbarth; Helena U. Zacharias; Peter J. Oefner; John Quackenbush; et al. (RECOMB, 2024)