Specific empirical free energy function for automated docking of carbohydrates to proteins. - Alain Laederach; Peter J. Reilly (J. Comput. Chem., 2003)

Puckering Coordinates of Monocyclic Rings by Triangular Decomposition. - Anthony D. Hill; Peter J. Reilly (J. Chem. Inf. Model., 2007)

A Gibbs free energy correlation for automated docking of carbohydrates. - Anthony D. Hill; Peter J. Reilly (J. Comput. Chem., 2008)

ThYme: a database for thioester-active enzymes. - David C. Cantu; Yingfei Chen; Matthew L. Lemons; Peter J. Reilly (Nucleic Acids Res., 2011)