What Geometric Visual Hallucinations Tell Us about the Visual Cortex. - Paul C. Bressloff; Jack D. Cowan; Martin Golubitsky; Peter J. Thomas 001; Matthew C. Wiener (Neural Comput., 2002)

The Diffusion-Limited Biochemical Signal-Relay Channel. - Peter J. Thomas 001; Donald J. Spencer; Sierra K. Hampton; Peter Park; Joseph P. Zurkus (NIPS, 2003)

Reliability and bifurcation in neurons driven by multiple sinusoids. - Peter J. Thomas 001; Paul H. E. Tiesinga; Jean-Marc Fellous; Terrence J. Sejnowski (Neurocomputing, 2003)

An Information Theoretic Framework for Eukaryotic Gradient Sensing. - Joseph M. Kimmel; Richard M. Salter; Peter J. Thomas 001 (NIPS, 2006)

Information Maximization Fails to Maximize Expected Utility in a Simple Foraging Model - Edward K. Agarwala; Hillel J. Chiel; Peter J. Thomas 001 (CoRR, 2010)

Finding the Event Structure of Neuronal Spike Trains. - J. Vincent Toups; Jean-Marc Fellous; Peter J. Thomas 001; Terrence J. Sejnowski; Paul H. E. Tiesinga (Neural Comput., 2011)

Spontaneous autoresuscitation in a model of respiratory control. - Casey O. Diekman; Christopher G. Wilson; Peter J. Thomas 001 (EMBC, 2012)

Random local temporal structure of category fluency responses. - David J. Meyer; Jason Messer; Tanya Singh; Peter J. Thomas 001; Wojbor A. Woyczynski; Jeffrey A. Kaye; Alan J. Lerner (J. Comput. Neurosci., 2012)

Multiple Spike Time Patterns Occur at Bifurcation Points of Membrane Potential Dynamics. - J. Vincent Toups; Jean-Marc Fellous; Peter J. Thomas 001; Terrence J. Sejnowski; Paul H. E. Tiesinga (PLoS Comput. Biol., 2012)

Phase Resetting in an Asymptotically Phaseless System: On the Phase Response of Limit Cycles Verging on a Heteroclinic Orbit. - Kendrick M. Shaw; Youngmin Park; Hillel J. Chiel; Peter J. Thomas 001 (SIAM J. Appl. Dyn. Syst., 2012)

Information theory of intercellular signal transduction. - Andrew W. Eckford; Peter J. Thomas 001 (ACSSC, 2015)

Commentary on Structured chaos shapes spike-response noise entropy in balanced neural networks, by Lajoie, Thivierge, and Shea-Brown. - Peter J. Thomas 001 (Frontiers Comput. Neurosci., 2015)

Stochastic representations of ion channel kinetics and exact stochastic simulation of neuronal dynamics. - David F. Anderson; Bard Ermentrout; Peter J. Thomas 001 (J. Comput. Neurosci., 2015)

The significance of dynamical architecture for adaptive responses to mechanical loads during rhythmic behavior. - Kendrick M. Shaw; David N. Lyttle; Jeffrey P. Gill; Miranda J. Cullins; Jeffrey M. McManus; Hui Lu; Peter J. Thomas 001; Hillel J. Chiel (J. Comput. Neurosci., 2015)

Finite-state channel models for signal transduction in neural systems. - Andrew W. Eckford; Kenneth A. Loparo; Peter J. Thomas 001 (ICASSP, 2016)

Shannon capacity of signal transduction for multiple independent receptors. - Peter J. Thomas 001; Andrew W. Eckford (ISIT, 2016)

Entropy of the Sum of Two Independent, Non-Identically-Distributed Exponential Random Variables. - Andrew W. Eckford; Peter J. Thomas 001 (CoRR, 2016)

Capacity of a Simple Intercellular Signal Transduction Channel. - Peter J. Thomas 001; Andrew W. Eckford (IEEE Trans. Inf. Theory, 2016)

Guest Editorial Biological Applications of Information Theory in Honor of Claude Shannon's Centennial - Part 1. - Alexander G. Dimitrov; Faramarz Fekri; Aurel A. Lazar; Stefan M. Moser; Peter J. Thomas 001 (IEEE Trans. Mol. Biol. Multi Scale Commun., 2016)

Guest Editorial Biological Applications of Information Theory in Honor of Claude Shannon's Centennial - Part II. - Alexander G. Dimitrov; Faramarz Fekri; Aurel A. Lazar; Stefan M. Moser; Peter J. Thomas 001 (IEEE Trans. Mol. Biol. Multi Scale Commun., 2016)

Robustness, flexibility, and sensitivity in a multifunctional motor control model. - David N. Lyttle; Jeffrey P. Gill; Kendrick M. Shaw; Peter J. Thomas 001; Hillel J. Chiel (Biol. Cybern., 2017)

Experimental Validation of a Closed-Loop Respiratory Control Model using Dynamic Clamp. - Casey O. Diekman; Peter J. Thomas 001; Christopher G. Wilson (EMBC, 2018)

Thermodynamic Properties of Molecular Communication. - Andrew W. Eckford; Benjamin Kuznets-Speck; Michael Hinczewski; Peter J. Thomas 001 (ISIT, 2018)

Welcome from the new Editor(s)-in-Chief. - Benjamin Lindner; Peter J. Thomas 001; Jean-Marc Fellous (Biol. Cybern., 2018)

Stochastic shielding and edge importance for Markov chains with timescale separation. - Deena R. Schmidt; Roberto F. Galán; Peter J. Thomas 001 (PLoS Comput. Biol., 2018)

The Channel Capacity of Channelrhodopsin and Other Intensity-Driven Signal Transduction Receptors. - Andrew W. Eckford; Peter J. Thomas 001 (IEEE Trans. Mol. Biol. Multi Scale Commun., 2018)

Linear Noise Approximation of Intensity-Driven Signal Transduction Channels. - Gregory R. Hessler; Andrew W. Eckford; Peter J. Thomas 001 (GLOBECOM, 2019)

Control theory in biology and medicine - Introduction to the special issue. - Peter J. Thomas 001; Mette Sofie Olufsen; Rodolphe Sepulchre; Pablo A. Iglesias; Auke Jan Ijspeert; Manoj Srinivasan (Biol. Cybern., 2019)

Robotics Application of a Method for Analytically Computing Infinitesimal Phase Response Curves. - Marshaun N. Fitzpatrick; Yangyang Wang 002; Peter J. Thomas 001; Roger D. Quinn; Nicholas S. Szczecinski (Living Machines, 2020)

A Renewed Vision for Biological Cybernetics. - Benjamin Lindner; Peter J. Thomas 001; Jean-Marc Fellous (Biol. Cybern., 2020)

Control for multifunctionality: bioinspired control based on feeding in Aplysia californica. - Victoria A. Webster-Wood; Jeffrey P. Gill; Peter J. Thomas 001; Hillel J. Chiel (Biol. Cybern., 2020)

Fast and Accurate Langevin Simulations of Stochastic Hodgkin-Huxley Dynamics. - Shusen Pu; Peter J. Thomas 001 (Neural Comput., 2020)

A Partial Differential Equation for the Mean-Return-Time Phase of Planar Stochastic Oscillators. - Alexander Cao; Benjamin Lindner; Peter J. Thomas 001 (SIAM J. Appl. Math., 2020)

Subjective Information in Life Processes: A Computational Case Study. - Tyler Barker; Peter J. Thomas 001; Massimiliano Pierobon (NANOCOM, 2021)

Biological Cybernetics: 60 years and more to come. - Benjamin Lindner; Peter J. Thomas 001; Jean-Marc Fellous; Paul H. E. Tiesinga (Biol. Cybern., 2021)

Resolving molecular contributions of ion channel noise to interspike interval variability through stochastic shielding. - Shusen Pu; Peter J. Thomas 001 (Biol. Cybern., 2021)

Correction to: Resolving molecular contributions of ion channel noise to interspike interval variability through stochastic shielding. - Shusen Pu; Peter J. Thomas 001 (Biol. Cybern., 2021)

Correction to: Control for multifunctionality: bioinspired control based on feeding in Aplysia californica. - Victoria A. Webster-Wood; Jeffrey P. Gill; Peter J. Thomas 001; Hillel J. Chiel (Biol. Cybern., 2021)

Dynamical consequences of sensory feedback in a half-center oscillator coupled to a simple motor system. - Zhuojun Yu; Peter J. Thomas 001 (Biol. Cybern., 2021)

Shape versus Timing: Linear Responses of a Limit Cycle with Hard Boundaries under Instantaneous and Static Perturbation. - Yangyang Wang 002; Jeffrey P. Gill; Hillel J. Chiel; Peter J. Thomas 001 (SIAM J. Appl. Dyn. Syst., 2021)

A Synthetic Nervous System with Coupled Oscillators Controls Peristaltic Locomotion. - Shane Riddle; William Nourse; Zhuojun Yu; Peter J. Thomas 001; Roger D. Quinn (Living Machines, 2022)

GymSlug: Deep Reinforcement Learning Toward Bio-inspired Control Based on Aplysia californica Feeding. - Wenhuan Sun; Mengdi Xu; Jeffrey P. Gill; Peter J. Thomas 001; Hillel J. Chiel; Victoria A. Webster-Wood (Living Machines, 2022)

Mean-return-time phase of a stochastic oscillator provides an approximate renewal description for the associated point process. - Konstantin Holzhausen; Lukas Ramlow; Shusen Pu; Peter J. Thomas 001; Benjamin Lindner (Biol. Cybern., 2022)

Stochastic oscillators in biology: introduction to the special issue. - James MacLaurin 001; Jean-Marc Fellous; Peter J. Thomas 001; Benjamin Lindner (Biol. Cybern., 2022)

Quantitative comparison of the mean-return-time phase and the stochastic asymptotic phase for noisy oscillators. - Alberto Pérez-Cervera; Benjamin Lindner; Peter J. Thomas 001 (Biol. Cybern., 2022)

Variational and phase response analysis for limit cycles with hard boundaries, with applications to neuromechanical control problems. - Yangyang Wang 002; Jeffrey P. Gill; Hillel J. Chiel; Peter J. Thomas 001 (Biol. Cybern., 2022)

Subjective Information and Survival in a Simulated Biological System. - Tyler Barker; Massimiliano Pierobon; Peter J. Thomas 001 (Entropy, 2022)

Guest Editorial Special Issue on "Edge-Based Wireless Communications Technologies to Counter Communicable Infectious Diseases". - Sasitharan Balasubramaniam; Robert Schober; Massimiliano Pierobon; Sudip Misra; Peter J. Thomas 001 (IEEE J. Sel. Areas Commun., 2022)

Cheater suppression and stochastic clearance through quorum sensing. - Alexander S. Moffett; Peter J. Thomas 001; Michael Hinczewski; Andrew W. Eckford (PLoS Comput. Biol., 2022)

The Network HHD: Quantifying Cyclic Competition in Trait-Performance Models of Tournaments. - Alexander Strang; Karen C. Abbott; Peter J. Thomas 001 (SIAM Rev., 2022)

Explicitly Solvable Continuous-Time Inference for Partially Observed Markov Processes. - Daniel Chen; Alexander G. Strang; Andrew W. Eckford; Peter J. Thomas 001 (IEEE Trans. Signal Process., 2022)

A Metric to Quantify Subjective Information in Biological Gradient Sensing. - Tyler Barker; Peter J. Thomas 001; Massimiliano Pierobon (GLOBECOM, 2023)

Sensitivity to Control Signals in Triphasic Rhythmic Neural Systems: A Comparative Mechanistic Analysis via Infinitesimal Local Timing Response Curves. - Zhuojun Yu; Jonathan E. Rubin; Peter J. Thomas 001 (Neural Comput., 2023)

Tutorial: using NEURON for neuromechanical simulations. - Chris Fietkiewicz; Robert A. McDougal; David Corrales Marco; Hillel J. Chiel; Peter J. Thomas 001 (Frontiers Comput. Neurosci., 2023)

Fitness Value of Subjective Information for Living Organisms. - Tyler S. Barker; Peter J. Thomas 001; Alexander S. Moffett; Andrew W. Eckford; Massimiliano Pierobon (NANOCOM, 2024)

On the Relation between Infinitesimal Shape Response Curves and Phase-Amplitude Reduction for Single and Coupled Limit-Cycle Oscillators. - Max Kreider; Peter J. Thomas 001 (SIAM J. Appl. Dyn. Syst., 2024)

COVID-19 and silent hypoxemia in a minimal closed-loop model of the respiratory rhythm generator. - Casey O. Diekman; Peter J. Thomas 001; Christopher G. Wilson (Biol. Cybern., 2024)

Variational analysis of sensory feedback mechanisms in powerstroke-recovery systems. - Zhuojun Yu; Peter J. Thomas 001 (Biol. Cybern., 2024)

Beyond the Nobel prizes: towards new synergies between Computational Neuroscience and Artificial Intelligence. - Jean-Marc Fellous; Peter J. Thomas 001; Paul H. E. Tiesinga; Benjamin Lindner (Biol. Cybern., 2025)