Rat Genome Database (RGD): mapping disease onto the genome. - Simon N. Twigger; Jian Lu; Mary Shimoyama; Dan Chen; Dean Pasko; Hanping Long; Jessica Ginster; Chin-Fu Chen; Rajni Nigam; Anne E. Kwitek; Janan T. Eppig; Lois Maltais; et al. (Nucleic Acids Res., 2002)

A New Self-Organizing Map and Fuzzy Logic Based Data Mining Approach for Genetic and Phenotypic Analysis of Rat Strains. - Xin Feng; Hao Jiang; Xiao Dong; Peter J. Tonellato (METMBS, 2003)

B.E.A.R. GeneInfo: A tool for identifying gene-related biomedical publications through user modifiable queries. - Guohui Zhou; Xinyu Wen; Hang Liu; Michael J. Schlicht; Martin J. Hessner; Peter J. Tonellato; Milton W. Datta (BMC Bioinform., 2004)

Analysis of concordance of different haplotype block partitioning algorithms. - Amit R. Indap; Gabor T. Marth; Craig A. Struble; Peter J. Tonellato; Michael Olivier (BMC Bioinform., 2005)

The Rat Genome Database (RGD): developments towards a phenome database. - Norberto de la Cruz; Susan Bromberg; Dean Pasko; Mary Shimoyama; Simon N. Twigger; Jiali Chen; Chin-Fu Chen; Chunyu Fan; Cindy Foote; Gopal R. Gopinath; Glenn Harris; Aubrey Hughes; et al. (Nucleic Acids Res., 2005)

Cluster Methodology Defines Archetype Sentinel Consomic Rats. - Nancy L. Sobczak; George F. Corliss; Martin A. Seitz; Peter J. Tonellato (CIBCB, 2007)

Mining personalized medicine algorithms with surrogate algorithm tags. - Chih-Lin Chi; Peter J. Kos; Vincent A. Fusaro; Rimma Pivovarov; Prasad Patil; Peter J. Tonellato (IHI, 2010)

Cloud computing for comparative genomics. - Dennis P. Wall; Parul Kudtarkar; Vincent A. Fusaro; Rimma Pivovarov; Prasad Patil; Peter J. Tonellato (BMC Bioinform., 2010)

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. - Joanne S. Luciano; Bosse Andersson; Colin R. Batchelor; Olivier Bodenreider; Tim Clark; Christine K. Denney; Christopher Domarew; Thomas Gambet; Lee Harland; Anja Jentzsch; Vipul Kashyap; Peter J. Kos; et al. (J. Biomed. Semant., 2011)

Biomedical Cloud Computing With Amazon Web Services. - Vincent A. Fusaro; Prasad Patil; Erik Gafni; Dennis P. Wall; Peter J. Tonellato (PLoS Comput. Biol., 2011)

Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package. - Mohamed El-Kalioby; Mohamed Abouelhoda; Jan Krüger; Robert Giegerich; Alexander Sczyrba; Dennis P. Wall; Peter J. Tonellato (BMC Bioinform., 2012)

Secondary Use of a Statewide Electronic Health Record System for Patient-Centered Outcome Research: An Application to Anticoagulation Agents. - Kourosh Ravvaz; Michael Michalkiewicz; Peter J. Tonellato (AMIA, 2013)

Discover Improved-Outcome Evidence for Personalized Treatment from Electronic Health Records (EHR). - Chih-Lin Chi; Peter J. Tonellato (AMIA, 2014)

COSMOS: Python library for massively parallel workflows. - Erik Gafni; Lovelace J. Luquette; Alex Lancaster; Jared B. Hawkins; Jae-Yoon Jung; Yassine Souilmi; Dennis P. Wall; Peter J. Tonellato (Bioinform., 2014)

COSMOS: cloud enabled NGS analysis. - Yassine Souilmi; Jae-Yoon Jung; Alex Lancaster; Erik Gafni; Saaid Amzazi; Hassan Ghazal; Dennis P. Wall; Peter J. Tonellato (BMC Bioinform., 2015)

Optimal decision support rules improve personalize warfarin treatment outcomes. - Chih-Lin Chi; Kourosh Ravvaz; John Weissert; Peter J. Tonellato (EMBC, 2016)

MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants. - Hatem Elshazly; Yassine Souilmi; Peter J. Tonellato; Dennis P. Wall; Mohamed Abouelhoda (BMC Bioinform., 2017)

Personalized long-term prediction of cognitive function: Using sequential assessments to improve model performance. - Chih-Lin Chi; Wenjun Zeng 001; Wonsuk Oh; Soo Borson; Tatiana Lenskaia; Xinpeng Shen; Peter J. Tonellato (J. Biomed. Informatics, 2017)

Personalize Warfarin Trearment by Optimizing Protocol Assignment. - Chih-Lin Chi; Xinpeng Shen; Kourosh Ravvaz; John Weissert; Peter J. Tonellato (ICHI, 2018)

Using simulation and optimization approach to improve outcome through warfarin precision treatment. - Chih-Lin Chi; Lu He; Kourosh Ravvaz; John Weissert; Peter J. Tonellato (PSB, 2018)

Mutational Forks: Inferring Deregulated Flow of Signal Transduction Based on Patient-Specific Mutations. - Olha Kholod; Zhen Lyu; Jonathan B. Mitchem; Peter J. Tonellato; Trupti Joshi; Dmitriy Shin (BIBM, 2019)

Accelerating Variant Calling on Human Genomes Using a Commodity Cluster. - Praveen Rao 001; Arun Zachariah; Deepthi S. Rao; Peter J. Tonellato; Wesley C. Warren; Eduardo J. Simões (CIKM, 2021)

Electronic Medical Record Specialty Group Comparison by Multinomial Logistic Regression. - Katie Wilkinson; Kangwon Seo; Robert Pierce; Peter J. Tonellato; Jung Hyup Kim; Danny Myers (ICHI, 2021)

Variant Analysis of Human Genome Sequences for COVID-19 Research. - Praveen Rao 001; Arun Zachariah; Deepthi S. Rao; Peter J. Tonellato; Wesley C. Warren; Eduardo J. Simões (IEEE DataPort, 2021)

Does comorbidity matrix provide similar amount of predictive information: Comparisons from Charlson and Elixhauser using Deep Learning. - Prajwal Mani Pradhan; Matt Loth; Peter J. Tonellato; Yue Liang; Terrence J. Adam; Chin-Lin Chi; Pui Ying Yew; Jennifer G. Robinson (ICHI, 2022)

Producing personalized statin treatment plans to optimize clinical outcomes using big data and machine learning. - Chih-Lin Chi; Jin Wang; Pui Ying Yew; Tatiana Lenskaia; Matt Loth; Prajwal Mani Pradhan; Yue Liang; Prashanth Kurella; Rishabh Mehta; Jennifer G. Robinson; Peter J. Tonellato; Terrence J. Adam (J. Biomed. Informatics, 2022)