Bayesian analysis of signaling networks governing embryonic stem cell fate decisions. - Peter J. Woolf; Wendy Prudhomme; Laurence Daheron; George Q. Daley; Douglas A. Lauffenburger (Bioinform., 2005)

miniTUBA: medical inference by network integration of temporal data using Bayesian analysis. - Zuoshuang Xiang; Rebecca M. Minter; Xiaoming Bi; Peter J. Woolf; Yongqun He (Bioinform., 2007)

poolHiTS: A Shifted Transversal Design based pooling strategy for high-throughput drug screening. - Raghunandan M. Kainkaryam; Peter J. Woolf (BMC Bioinform., 2008)

Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information. - Weijun Luo; Kurt D. Hankenson; Peter J. Woolf (BMC Bioinform., 2008)

Revealing Social Networks of Spammers Through Spectral Clustering. - Kevin S. Xu 001; Mark Kliger; Yilun Chen; Peter J. Woolf; Alfred O. Hero III (ICC, 2009)

GAGE: generally applicable gene set enrichment for pathway analysis. - Weijun Luo; Michael S. Friedman; Kerby Shedden; Kurt D. Hankenson; Peter J. Woolf (BMC Bioinform., 2009)

Using mechanistic Bayesian networks to identify downstream targets of the Sonic Hedgehog pathway. - Abhik Shah; Toyoaki Tenzen; Andrew P. McMahon; Peter J. Woolf (BMC Bioinform., 2009)

Python Environment for Bayesian Learning: Inferring the Structure of Bayesian Networks from Knowledge and Data. - Abhik Shah; Peter J. Woolf (J. Mach. Learn. Res., 2009)

poolMC: Smart pooling of mRNA samples in microarray experiments. - Raghunandan M. Kainkaryam; Angela Bruex; Anna C. Gilbert; John Schiefelbein; Peter J. Woolf (BMC Bioinform., 2010)

RegNetB: Predicting Relevant Regulator-Gene Relationships in Localized Prostate Tumor Samples. - Angel Alvarez; Peter J. Woolf (BMC Bioinform., 2011)

Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks. - Angel Alvarez; Peter J. Woolf (BMC Syst. Biol., 2011)

Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization. - Weijun Luo; Michael S. Friedman; Kurt D. Hankenson; Peter J. Woolf (BMC Syst. Biol., 2011)