Genome-wide prediction, display and refinement of binding sites with information theory-based models. - Sashidhar Gadiraju; Carrie A. Vyhlidal; J. Steven Leeder; Peter K. Rogan (BMC Bioinform., 2003)

High Resolution Detection of Chromosome Abnormalities with Single Copy Fluorescence In Situ Hybridization. - Peter K. Rogan; Joan Knoll (ISBI, 2004)

Tandem machine learning for the identification of genes regulated by transcription factors. - Deendayal Dinakarpandian; Venetia Raheja; Saumil Mehta; Erin G. Schuetz; Peter K. Rogan (BMC Bioinform., 2005)

BIPAD: A web server for modeling bipartite sequence elements. - Chengpeng Bi; Peter K. Rogan (BMC Bioinform., 2006)

Ab initio exon definition using an information theory-based approach. - Peter K. Rogan (CISS, 2009)

An Accurate Image Processing Algorithm for Detecting FISH Probe Locations Relative to Chromosome Landmarks on DAPI Stained Metaphase Chromosome Images. - Subasinghe A. Akila Akila; Jagath Samarabandu; Joan Knoll; Wahab Khan; Peter K. Rogan (CRV, 2010)

An image processing algorithm for accurate extraction of the centerline from human metaphase chromosomes. - Akila Subasinghe Arachchige; Jagath Samarabandu; Joan Knoll; Wahab Khan; Peter K. Rogan (ICIP, 2010)

Improving Phenotype Name Recognition. - Maryam Khordad; Robert E. Mercer; Peter K. Rogan (Canadian AI, 2011)

Intensity integrated Laplacian algorithm for human metaphase chromosome centromere detection. - Akila Subasinghe Arachchige; Jagath Samarabandu; Peter K. Rogan; Joan Knoll (CCECE, 2012)

A Machine Learning Approach for Phenotype Name Recognition. - Maryam Khordad; Robert E. Mercer; Peter K. Rogan (COLING, 2012)

Automatic Detection of Pale Path and Overlaps in Chromosome Images using Adaptive Search Technique and Re-thresholding. - Rajeev Ranjan; Akila Subasinghe Arachchige; Jagath Samarabandu; Peter K. Rogan; Joan Knoll (VISAPP (1), 2012)

Interpretation, Stratification and Evidence for Sequence Variants Affecting mRNA Splicing in Complete Human Genome Sequences. - Ben C. Shirley; Eliseos J. Mucaki; Tyson Whitehead; Paul I. Costea; Pelin Akan; Peter K. Rogan (Genom. Proteom. Bioinform., 2013)

Intensity Integrated Laplacian-Based Thickness Measurement for Detecting Human Metaphase Chromosome Centromere Location. - Akila Subasinghe Arachchige; Jagath Samarabandu; Joan Knoll; Peter K. Rogan (IEEE Trans. Biomed. Eng., 2013)

Visual analytics for supporting evidence-based interpretation of molecular cytogenomic findings. - Paul Parsons; Kamran Sedig; Robert E. Mercer; Maryam Khordad; Joan Knoll; Peter K. Rogan (VAHC, 2015)

Centromere detection of human metaphase chromosome images using a candidate based method. - Akila Subasinghe Arachchige; Jagath Samarabandu; YanXin Li; Ruth Wilkins; Farrah Flegal; Joan Knoll; Peter K. Rogan (F1000Research, 2016)

Predicting Outcomes of Hormone and Chemotherapy in the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) Study by Biochemically-inspired Machine Learning. - Iman Rezaeian; Eliseos J. Mucaki; Katherina Baranova; Huy Quang Pham; Dimo Angelov; Alioune Ngom; Luis Rueda 001; Peter K. Rogan (F1000Research, 2016)

Transcription factor binding site clusters identify target genes with similar tissue-wide expression and buffer against mutations. - Ruipeng Lu; Peter K. Rogan (F1000Research, 2018)

Predicting ionizing radiation exposure using biochemically-inspired genomic machine learning. - Jonathan Z. L. Zhao; Eliseos J. Mucaki; Peter K. Rogan (F1000Research, 2018)