PhyloPat: phylogenetic pattern analysis of eukaryotic genes. - Tim Hulsen; Jacob de Vlieg; Peter M. A. Groenen (BMC Bioinform., 2006)

Testing statistical significance scores of sequence comparison methods with structure similarity. - Tim Hulsen; Jacob de Vlieg; Jack A. M. Leunissen; Peter M. A. Groenen (BMC Bioinform., 2006)

PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood. - Tim Hulsen; Peter M. A. Groenen; Jacob de Vlieg; Wynand Alkema (Nucleic Acids Res., 2009)