Dynamical Spatial Warping: A Novel Method for the Conformational Sampling of Biophysical Structure. - Peter Minary; Mark E. Tuckerman; Glenn J. Martyna (SIAM J. Sci. Comput., 2008)

Conformational Optimization with Natural Degrees of Freedom: A Novel Stochastic Chain Closure Algorithm. - Peter Minary; Michael Levitt 001 (J. Comput. Biol., 2010)

Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo. - Bernhard Knapp; Samuel Demharter; Charlotte M. Deane; Peter Minary (Bioinform., 2016)

Tertiary Element Interaction in HIV-1 TAR. - Konrad Krawczyk; Adelene Y. L. Sim; Bernhard Knapp; Charlotte M. Deane; Peter Minary (J. Chem. Inf. Model., 2016)

DNA Sequence Complexity Reveals Structure Beyond GC Content in Nucleosome Occupancy. - Hector Zenil; Peter Minary (CoRR, 2017)

In silico structural modeling of multiple epigenetic marks on DNA. - Konrad Krawczyk; Samuel Demharter; Bernhard Knapp; Charlotte M. Deane; Peter Minary (Bioinform., 2018)

HLA-DM Stabilizes the Empty MHCII Binding Groove: A Model Using Customized Natural Move Monte Carlo. - Samuel Demharter; Bernhard Knapp; Charlotte M. Deane; Peter Minary (J. Chem. Inf. Model., 2019)

crisprSQL: a novel database platform for CRISPR/Cas off-target cleavage assays. - Florian Störtz; Peter Minary (Nucleic Acids Res., 2021)

CRISPR-DBA: a deep learning framework for uncertainty quantification of CRISPR off-target activities. - Xinzhe Cao; Peter Minary (BIBM, 2024)

Be-dataHIVE: a base editing database. - Lucas Schneider; Peter Minary (BMC Bioinform., 2024)