Estimating Mutation Distances from Unaligned Genomes. - Bernhard Haubold; Peter Pfaffelhuber; Mirjana Domazet-Loso; Thomas Wiehe (J. Comput. Biol., 2009)

Alignment-free estimation of nucleotide diversity. - Bernhard Haubold; Floyd A. Reed; Peter Pfaffelhuber (Bioinform., 2011)

An alignment-free test for recombination. - Bernhard Haubold; Linda Krause; Thomas Horn; Peter Pfaffelhuber (Bioinform., 2013)

andi: Fast and accurate estimation of evolutionary distances between closely related genomes. - Bernhard Haubold; Fabian Klötzl; Peter Pfaffelhuber (Bioinform., 2015)

A spatial model for selection and cooperation. - Peter Czuppon; Peter Pfaffelhuber (J. Appl. Probab., 2017)

High-complexity regions in mammalian genomes are enriched for developmental genes. - Anton Pirogov; Peter Pfaffelhuber; Angelika Börsch-Haubold; Bernhard Haubold (Bioinform., 2021)

pgainsim: an R-package to assess the mode of inheritance for quantitative trait loci in GWAS. - Nora Scherer; Peggy Sekula; Peter Pfaffelhuber; Pascal Schlosser (Bioinform., 2021)

The range of once-reinforced random walk in one dimension. - Peter Pfaffelhuber; Jakob Stiefel (Random Struct. Algorithms, 2021)

Neural networks for self-adjusting mutation rate estimation when the recombination rate is unknown. - Klara Elisabeth Burger; Peter Pfaffelhuber; Franz Baumdicker (PLoS Comput. Biol., 2022)