PheKB.org: An Online Collaboration Tool for Phenotype Algorithm Research. - Joshua Pruitt; Peter Speltz; Jacqueline Kirby; Melissa A. Basford; Jonathan L. Haines; Joshua C. Denny (AMIA, 2012)

Evaluation of Existing Phenotype Authoring Tools for Clinical Research. - Luke V. Rasmussen; Jie Xu 011; Ruijue Liu; Qian Zhu 003; Jennifer A. Pacheco; Jyotishman Pathak; William K. Thompson; Joshua C. Denny; Huan Mo; Richard C. Kiefer; Peter Speltz; Enid N. H. Montague (AMIA, 2014)

Phenome-Wide Association Studies Using NLP-Derived Concepts. - Pedro L. Teixeira; Robert J. Carroll; Lisa Bastarache; Peter Speltz; Joshua C. Smith; Joshua C. Denny (AMIA, 2014)

Qualitative evaluation of three phenotype information models to find methotrexate liver injury. - Qian Zhu 003; Huan Mo; Luke V. Rasmussen; Andrew R. Post; Jennifer A. Pacheco; Jie Xu 011; Richard C. Kiefer; Peter Speltz; Enid N. H. Montague; William K. Thompson; Joshua C. Denny; Jyotishman Pathak (AMIA, 2014)

Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study. - Guoqian Jiang; Harold R. Solbrig; Richard C. Kiefer; Luke V. Rasmussen; Huan Mo; Jennifer A. Pacheco; Enid N. H. Montague; Jie Xu 011; Peter Speltz; William K. Thompson; Joshua C. Denny; Christopher G. Chute; et al. (AMIA, 2015)

Usability of a phenotype builder prototype and lessons learned for the design of phenotyping tools. - Enid N. H. Montague; Jie Xu 011; Luke V. Rasmussen; Joshua C. Denny; Guoqian Jiang; Richard C. Kiefer; Jennifer A. Pacheco; Peter Speltz; William K. Thompson; Jyotishman Pathak (AMIA, 2015)

A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. - Guoqian Jiang; Harold R. Solbrig; Richard C. Kiefer; Luke V. Rasmussen; Huan Mo; Peter Speltz; William K. Thompson; Joshua C. Denny; Christopher G. Chute; Jyotishman Pathak (MedInfo, 2015)

Desiderata for computable representations of electronic health records-driven phenotype algorithms. - Huan Mo; William K. Thompson; Luke V. Rasmussen; Jennifer A. Pacheco; Guoqian Jiang; Richard C. Kiefer; Qian Zhu 003; Jie Xu 011; Enid N. H. Montague; David S. Carrell; Todd Lingren; Frank D. Mentch; et al. (J. Am. Medical Informatics Assoc., 2015)

Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research. - Jie Xu 011; Luke V. Rasmussen; Pamela L. Shaw; Guoqian Jiang; Richard C. Kiefer; Huan Mo; Jennifer A. Pacheco; Peter Speltz; Qian Zhu 003; Joshua C. Denny; Jyotishman Pathak; William K. Thompson; et al. (J. Am. Medical Informatics Assoc., 2015)

Using natural language processing to provide personalized learning opportunities from trainee clinical notes. - Joshua C. Denny; Anderson Spickard III; Peter Speltz; Renee Porier; Donna E. Rosenstiel; James S. Powers (J. Biomed. Informatics, 2015)

An NLP Extension to the Quality Data Model for EHR-Driven Phenotype Algorithm Authoring and Execution. - Guoqian Jiang; William K. Thompson; Luke V. Rasmussen; Richard C. Kiefer; Jennifer A. Pacheco; Huan Mo; Peter Speltz; Joshua C. Denny; Jyotishman Pathak (AMIA, 2016)

PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. - Jacqueline Kirby; Peter Speltz; Luke V. Rasmussen; Melissa A. Basford; Omri Gottesman; Peggy L. Peissig; Jennifer A. Pacheco; Gerard Tromp; Jyotishman Pathak; David S. Carrell; Stephen B. Ellis; Todd Lingren; et al. (J. Am. Medical Informatics Assoc., 2016)

Leveraging Value Sets from the Value Set Authority Center (VSAC) in a Standards-Based Clinical Data Repository. - Richard C. Kiefer; Luke V. Rasmussen; Jennifer A. Pacheco; Peter Speltz; Joshua C. Denny; William K. Thompson; Jyotishman Pathak; Guoqian Jiang (AMIA, 2017)

The Phenotype Execution and Modeling Architecture: A Roadmap Towards Next-generation Phenotyping Using EHRs. - Peter Speltz; Luke V. Rasmussen; Richard C. Kiefer; Jennifer A. Pacheco; William K. Thompson; Guoqian Jiang; Jyotishman Pathak; Joshua C. Denny (AMIA, 2017)

Development and Testing of Participant Provided Information Modules for the Precision Medicine Initiative. - Robert M. Cronin; Rebecca N. Jerome; Brandy Mapes; Kathryn Goggins; Ken Wallston; Katharine Donato; Mick P. Couper; Michael R. Elliott; Charles P. Mouton; Kemberlee Bonnet; Ezer Benaim; Jordan Sinclair; et al. (CRI, 2017)

Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. - Yizhen Zhong; Luke V. Rasmussen; Yu Deng; Jennifer A. Pacheco; Maureen E. Smith; Justin Starren; Wei-Qi Wei; Peter Speltz; Joshua C. Denny; Nephi Walton; George Hripcsak; Christopher G. Chute; et al. (BIBM, 2018)

A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments. - Jennifer A. Pacheco; Luke V. Rasmussen; Richard C. Kiefer; Thomas R. Campion Jr.; Peter Speltz; Robert J. Carroll; Sarah C. Stallings; Huan Mo; Monika Ahuja; Guoqian Jiang; Eric R. LaRose; Peggy L. Peissig; et al. (J. Am. Medical Informatics Assoc., 2018)

Real-time Clinical Note Monitoring to Detect Conditions for Follow-up: a Case Study of Clinical Trial Enrollment in Drug-induced Torsades de Pointes and Stevens-Johnson Syndrome. - Sarah DeLozier; Peter Speltz; Jason Brito; Leigh Anne Tang; Janey Wang; Joshua C. Smith; Dario A. Giuse; Elizabeth Phillips; Kristina Williams; Teresa Strickland; Giovanni Davogustto; Dan M. Roden; et al. (AMIA, 2020)

Real-time clinical note monitoring to detect conditions for rapid follow-up: A case study of clinical trial enrollment in drug-induced torsades de pointes and Stevens-Johnson syndrome. - Sarah DeLozier; Peter Speltz; Jason Brito; Leigh Anne Tang; Janey Wang; Joshua C. Smith; Dario A. Giuse; Elizabeth Phillips; Kristina Williams; T. Stephen Strickland; Giovanni Davogustto; Dan M. Roden; et al. (J. Am. Medical Informatics Assoc., 2021)