trome, trEST and trGEN: databases of predicted protein sequences. - Peter Sperisen; Christian Iseli; Marco Pagni; Brian J. Stevenson; Philipp Bucher; C. Victor Jongeneel (Nucleic Acids Res., 2004)

JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture. - Peter Sperisen; Marco Pagni (BMC Bioinform., 2005)

Stealth Proteins: In Silico Identification of a Novel Protein Family Rendering Bacterial Pathogens Invisible to Host Immune Defense. - Peter Sperisen; Christoph D. Schmid; Philipp Bucher; Olav Zilian (PLoS Comput. Biol., 2005)