Numerical Solution of Transport Equations for Bacterial Chemotaxis: Effect of Discretization of Directional Motion. - Benjamin J. Brosilow; Roseanne M. Ford; Sten Sarman; Peter T. Cummings (SIAM J. Appl. Math., 1996)

Perturbation Expansion of Alt's Cell Balance Equations Reduces to Segel's One-Dimensional Equations for Shallow Chemoattractant Gradients. - Kevin C. Chen; Peter T. Cummings; Roseanne M. Ford (SIAM J. Appl. Math., 1998)

A numerical method for solving a scalar advection-dominated transport equation with concentration-dependent sources. - Minghui Jin; Roseanne M. Ford; Peter T. Cummings (Comput. Chem. Eng., 2003)

Web-based Metaprogrammable Frontend for Molecular Dynamics Simulations. - Gergely Varga; Sara Toth; Christopher R. Iacovella; János Sallai; Péter Völgyesi; Ákos Lédeczi; Gabor Karsai; Peter T. Cummings (SIMULTECH, 2013)

Web- and Cloud-based Software Infrastructure for Materials Design. - János Sallai; Gergely Varga; Sara Toth; Christopher R. Iacovella; Christoph Klein 003; Clare McCabe; Ákos Lédeczi; Peter T. Cummings (ICCS, 2014)

A Hierarchical, Component Based Approach to Screening Properties of Soft Matter. - Christoph Klein 003; János Sallai; Trevor J. Jones; Christopher R. Iacovella; Clare McCabe; Peter T. Cummings (FOMMS, 2015)

MoSDeF Cassandra: A complete Python interface for the Cassandra Monte Carlo software. - Ryan S. DeFever; Ray A. Matsumoto; Alexander W. Dowling; Peter T. Cummings; Edward J. Maginn (J. Comput. Chem., 2021)

MoSDeF-GOMC: Python Software for the Creation of Scientific Workflows for the Monte Carlo Simulation Engine GOMC. - Brad Crawford; Umesh Timalsina; Co D. Quach; Nicholas C. Craven; Justin B. Gilmer; Clare McCabe; Peter T. Cummings; Jeffrey J. Potoff (J. Chem. Inf. Model., 2023)

MoSDeF-dihedral-fit: A lightweight software for fitting dihedrals within MoSDeF. - Brad Crawford; Co D. Quach; Nicholas C. Craven; Christopher R. Iacovella; Clare McCabe; Peter T. Cummings; Jeffrey J. Potoff (J. Open Source Softw., 2024)

SuperMetal: a generative AI framework for rapid and precise metal ion location prediction in proteins. - Xiaobo Lin; Zhaoqian Su; Yunchao Liu 001; Jingxian Liu; Xiaohan Kuang; Peter T. Cummings; Jesse Spencer-Smith; Jens Meiler (J. Cheminformatics, 2025)