Computational detection of cis-regulatory modules. - Stein Aerts; Peter Van Loo; Gert Thijs; Yves Moreau; Bart De Moor (ECCB, 2003)

A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes. - Stein Aerts; Peter Van Loo; Yves Moreau; Bart De Moor (Bioinform., 2004)

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis. - Stein Aerts; Peter Van Loo; Gert Thijs; Herbert Mayer; Rainer de Martin; Yves Moreau; Bart De Moor (Nucleic Acids Res., 2005)

ORegAnno: an open-access community-driven resource for regulatory annotation. - Obi L. Griffith; Stephen B. Montgomery; Bridget Bernier; Bryan Chu; Katayoon Kasaian; Stein Aerts; Shaun Mahony; Monica C. Sleumer; Mikhail Bilenky; Maximilian Haeussler; Malachi Griffith; Steven M. Gallo; et al. (Nucleic Acids Res., 2008)

ENDEAVOUR update: a web resource for gene prioritization in multiple species. - Léon-Charles Tranchevent; Roland Barriot; Shi Yu; Steven Van Vooren; Peter Van Loo; Bert Coessens; Bart De Moor; Stein Aerts; Yves Moreau (Nucleic Acids Res., 2008)

Computational methods for the detection of cis-regulatory modules. - Peter Van Loo; Peter Marynen (Briefings Bioinform., 2009)

The evolutionary history of 2,658 cancers. - Moritz Gerstung; Clemency Jolly; Ignaty Leshchiner; Stefan C. Dentro; Santiago Gonzalez; Thomas J. Mitchell; Yulia Rubanova; Pavana Anur; Kaixian Yu; Maxime Tarabichi; Amit G. Deshwar; Jeff Wintersinger; et al. (Nat., 2020)

Allele-specific multi-sample copy number segmentation in ASCAT. - Edith M. Ross; Kerstin Haase; Peter Van Loo; Florian Markowetz (Bioinform., 2021)

Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity. - Thomas B. K. Watkins; Emma C. Colliver; Matthew R. Huska; Tom L. Kaufmann; Emilia L. Lim; Cody B. Duncan; Kerstin Haase; Peter Van Loo; Charles Swanton; Nicholas McGranahan; Roland F. Schwarz (PLoS Comput. Biol., 2023)