Unipept web services for metaproteomics analysis. - Bart Mesuere; Toon Willems; Felix Van der Jeugt; Bart Devreese; Peter Vandamme; Peter Dawyndt (Bioinform., 2016)

PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing. - Gleb Goussarov; Ilse Cleenwerck; Mohamed Mysara; Natalie Leys; Pieter Monsieurs; Guillaume Tahon; Aurélien Carlier; Peter Vandamme; Rob Van Houdt (Bioinform., 2020)

gcType: a high-quality type strain genome database for microbial phylogenetic and functional research. - Wenyu Shi; Qinglan Sun; Guomei Fan; Hideaki Sugawara; Moriya Ohkuma; Takashi Itoh; Yuguang Zhou; Man Cai; Song-Gun Kim; Jung-Sook Lee; Ivo Sedlacek; David R. Arahal; et al. (Nucleic Acids Res., 2021)

Pre-trained Maldi Transformers improve MALDI-TOF MS-based prediction. - Gaetan De Waele; Gerben Menschaert; Peter Vandamme; Willem Waegeman (Comput. Biol. Medicine, 2025)