Intricate Knots in Proteins: Function and Evolution. - Peter Virnau; Leonid A. Mirny; Mehran Kardar (PLoS Comput. Biol., 2006)

Protein knot server: detection of knots in protein structures. - Grigory Kolesov; Peter Virnau; Mehran Kardar; Leonid A. Mirny (Nucleic Acids Res., 2007)

GPU accelerated Monte Carlo simulation of the 2D and 3D Ising model. - Tobias Preis; Peter Virnau; Wolfgang Paul 002; Johannes J. Schneider (J. Comput. Phys., 2009)

Multi-GPU accelerated multi-spin Monte Carlo simulations of the 2D Ising model. - Benjamin Block; Peter Virnau; Tobias Preis (Comput. Phys. Commun., 2010)

Implementation and performance analysis of bridging Monte Carlo moves for off-lattice single chain polymers in globular states. - Daniel Reith; Peter Virnau (Comput. Phys. Commun., 2010)

A Stevedore's Protein Knot. - Daniel Bölinger; Joanna I. Sulkowska; Hsiao-Ping Hsu; Leonid A. Mirny; Mehran Kardar; José N. Onuchic; Peter Virnau (PLoS Comput. Biol., 2010)

Monte Carlo simulations of a single polystyrene chain in spherical confinement. - Daniel Reith; Peter Virnau (Comput. Phys. Commun., 2011)

Monte Carlo simulations of the 2d-Ising model in the geometry of a long stripe. - D. Wilms; Anke Winkler; Peter Virnau; Kurt Binder (Comput. Phys. Commun., 2011)

Phase Separation of Colloid Polymer Mixtures Under Confinement. - Antonia Statt; Alexander Winkler; Peter Virnau; Kurt Binder (High Performance Computing in Science and Engineering, 2013)

How molecular knots can pass through each other. - Benjamin Trefz; Jonathan T. Siebert; Peter Virnau (Proc. Natl. Acad. Sci. USA, 2014)

A Monte Carlo Study of Knots in Long Double-Stranded DNA Chains. - Florian C. Rieger; Peter Virnau (PLoS Comput. Biol., 2016)

Molecular dynamics simulations in hybrid particle-continuum schemes: Pitfalls and caveats. - S. Stalter; Leonid Yelash; N. Emamy; Antonia Statt; Martin Hanke; Mária Lukácová-Medvid'ová; Peter Virnau (Comput. Phys. Commun., 2018)

KnotGenome: a server to analyze entanglements of chromosomes. - Joanna I. Sulkowska; Szymon Niewieczerzal; Aleksandra I. Jarmolinska; Jonathan T. Siebert; Peter Virnau; Wanda Niemyska (Nucleic Acids Res., 2018)

Reconstructing diploid 3D chromatin structures from single cell Hi-C data with a polymer-based approach. - Jan Rothörl; Maarten A. Brems; Tim J. Stevens; Peter Virnau (Frontiers Bioinform., 2023)