Layout Algorithms of Graph-Like Diagrams for GRADE Windows Graphic Editors. - Paulis Kikusts; Peteris Rucevskis (GD, 1995)

PASSIM - an open source software system for managing information in biomedical studies. - Juris Viksna; Edgars Celms; Martins Opmanis; Karlis Podnieks; Peteris Rucevskis; Andris Zarins; Amy Barrett; Sudeshna Guha Neogi; Maria Krestyaninova; Mark I. McCarthy; Alvis Brazma; Ugis Sarkans (BMC Bioinform., 2007)

A System for Information Management in BioMedical Studies - SIMBioMS. - Maria Krestyaninova; Andris Zarins; Juris Viksna; Natalja Kurbatova; Peteris Rucevskis; Sudeshna Guha Neogi; Mike Gostev; Teemu Perheentupa; Juha Knuuttila; Amy Barrett; Ilkka Lappalainen; Johan Rung; et al. (Bioinform., 2009)

Manipulating and Visualizing Data by Means of Data Galaxies. - Sergejs Kozlovics; Peteris Rucevskis (DB&IS, 2014)

An Inverse Distance-based Potential Field Function for Overlapping Point Set Visualization. - Jevgenijs Vihrovs; Krisjanis Prusis; Karlis Freivalds; Peteris Rucevskis; Valdis Krebs (IVAPP, 2014)

A Potential Field Function for Overlapping Point Set and Graph Cluster Visualization. - Jevgenijs Vihrovs; Krisjanis Prusis; Karlis Freivalds; Peteris Rucevskis; Valdis Krebs (VISIGRAPP (Selected Papers), 2014)

Application of Graph Clustering and Visualisation Methods to Analysis of Biomolecular Data. - Edgars Celms; Karlis Cerans; Karlis Freivalds; Paulis Kikusts; Lelde Lace; Gatis Melkus; Martins Opmanis; Darta Rituma; Peteris Rucevskis; Juris Viksna (DB&IS, 2018)

Graph-based Characterisations of Cell Types and Functionally Related Modules in Promoter Capture Hi-C Data. - Lelde Lace; Gatis Melkus; Peteris Rucevskis; Edgars Celms; Karlis Cerans; Paulis Kikusts; Martins Opmanis; Darta Rituma; Juris Viksna (BIOINFORMATICS, 2019)

Characteristic Topological Features of Promoter Capture Hi-C Interaction Networks. - Lelde Lace; Gatis Melkus; Peteris Rucevskis; Edgars Celms; Karlis Cerans; Paulis Kikusts; Martins Opmanis; Darta Rituma; Juris Viksna (BIOSTEC (Selected Papers), 2019)

Topological structure analysis of chromatin interaction networks. - Juris Viksna; Gatis Melkus; Edgars Celms; Karlis Cerans; Karlis Freivalds; Paulis Kikusts; Lelde Lace; Martins Opmanis; Darta Rituma; Peteris Rucevskis (BMC Bioinform., 2019)

Network motif-based analysis of regulatory patterns in paralogous gene pairs. - Gatis Melkus; Peteris Rucevskis; Edgars Celms; Karlis Cerans; Karlis Freivalds; Paulis Kikusts; Lelde Lace; Martins Opmanis; Darta Rituma; Juris Viksna (J. Bioinform. Comput. Biol., 2020)

Clique-Based Topological Characterization of Chromatin Interaction Hubs. - Gatis Melkus; Sandra Silina; Andrejs Sizovs; Peteris Rucevskis; Lelde Lace; Edgars Celms; Juris Viksna (ISBRA, 2023)

Gene Expression Variability Linked to Chromatin Clique Configurations and cis-Regulatory Elements. - Gatis Melkus; Andrejs Sizovs; Sandra Silina; Peteris Rucevskis; Lelde Lace; Edgars Celms; Juris Viksna (ICCBB, 2024)

Exploration and Visualization Methods for Chromatin Interaction Data. - Andrejs Sizovs; Sandra Silina; Gatis Melkus; Peteris Rucevskis; Lelde Lace; Edgars Celms; Juris Viksna (ISBRA (1), 2024)

Transcriptional Hubs Within Cliques in Ensemble Hi-C Chromatin Interaction Networks. - Gatis Melkus; Andrejs Sizovs; Peteris Rucevskis; Sandra Silina (J. Comput. Biol., 2024)

A technique for preserving network structure in randomized Hi-C data. - Andrejs Sizovs; Gatis Melkus; Peteris Rucevskis; Sandra Silina; Lelde Lace; Edgars Celms; Juris Viksna (J. Bioinform. Comput. Biol., 2024)

Enhanced Graph Representations of Chromatin Interaction Networks. - Edgars Celms; Lelde Lace; Gatis Melkus; Peteris Rucevskis; Sandra Silina; Andrejs Sizovs; Juris Viksna (BIOSTEC (1), 2025)