Automated Multi-view 3D Image Acquisition in Human Genome Research. - Michal Kozubek 001; Petr Matula; Heinz Eipel; Michael Hausmann (3DPVT, 2002)

High-Resolution Cytometry Network Project: Towards Remote a d Distributed Acquisition, Processing and Visualisation of 3D Image Data in Human Genome Research. - Michal Kozubek 001; Petr Matula; Pavel Matula; Petr Mejzlík (3DPVT, 2002)

High-Resolution Cytometry Network Project: Client/Server System for 3D Optical Microscope Data Storage and Analysis. - Pavel Matula; Petr Matula; Michal Kozubek 001; Petr Mejzlík (3DPVT, 2004)

Applications of Image Registration in Human Genome Research. - Petr Matula; Michal Kozubek 001; Pavel Matula (ECCV Workshops CVAMIA and MMBIA, 2004)

Automated Confocal Microscopy: The Way of Achieving both Quality and Quantity in 3D Image Cytometry. - Michal Kozubek 001; Petr Matula; Pavel Matula (ISBI, 2004)

Fast point-based 3-D alignment of live cells. - Petr Matula; Michal Kozubek 001; Vladimír Dvorák (IEEE Trans. Image Process., 2006)

Automated Analysis of siRNA Screens of Virus Infected Cells Based on Immunofluorescence Microscopy. - Petr Matula; Anil Kumar 006; Ilka Wörz; Nathalie Harder; Holger Erfle; Ralf Bartenschlager; Roland Eils; Karl Rohr (Bildverarbeitung für die Medizin, 2008)

Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy. - Pavel Matula; Martin Maska; Ondrej Danek; Petr Matula; Michal Kozubek 001 (ISBI, 2009)

Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images. - Apichat Suratanee; Ilka Rebhan; Petr Matula; Anil Kumar 006; Lars Kaderali; Karl Rohr; Ralf Bartenschlager; Roland Eils; Rainer König (Bioinform., 2010)

Normalizing for individual cell population context in the analysis of high-content cellular screens. - Bettina Knapp; Ilka Rebhan; Anil Kumar 006; Petr Matula; Narsis Aftab Kiani; Marco Binder; Holger Erfle; Karl Rohr; Roland Eils; Ralf Bartenschlager; Lars Kaderali (BMC Bioinform., 2011)

A benchmark for comparison of cell tracking algorithms. - Martin Maska; Vladimír Ulman; David Svoboda; Pavel Matula; Petr Matula; Cristina Ederra; Ainhoa Urbiola; Tomás España; Subramanian Venkatesan 001; Deepak M. W. Balak; Pavel Karas; Tereza Bolcková; et al. (Bioinform., 2014)

Automated cell segmentation in phase-contrast images based on classification and region growing. - Roman Stoklasa; Lukas Balek; Pavel Krejcí; Petr Matula (ISBI, 2015)

GPU implementation of linear morphological openings with arbitrary angle. - Pavel Karas; Vincent Morard; Jan Bartovsky; Thierry Grandpierre; Eva Dokládalová; Petr Matula; Petr Dokládal (J. Real Time Image Process., 2015)

Vascular network formation in silico using the extended cellular potts model. - David Svoboda; Vladimír Ulman; Peter Kovác; Barbara Salingova; Lenka Tesarová; Irena K. Koutna; Petr Matula (ICIP, 2016)

Single image reconstruction of human faces using database of depth images. - Zuzana Ferkova; Marek Zuzi; Petra Urbanova; Petr Matula (VS-GAMES, 2017)

Multimodal Point Distribution Model for Anthropological Landmark Detection. - Zuzana Ferkova; Petr Matula (ICIP, 2019)

DIC Image Segmentation of Dense Cell Populations by Combining Deep Learning and Watershed. - Filip Lux; Petr Matula (ISBI, 2019)

Cell Segmentation by Combining Marker-Controlled Watershed and Deep Learning. - Filip Lux; Petr Matula (CoRR, 2020)

Age and gender-based human face reconstruction from single frontal image. - Zuzana Ferkova; Petra Urbanová; Dominik Cerný; Marek Zuzi; Petr Matula (Multim. Tools Appl., 2020)

Topology Preserving Segmentation Fusion For Cells With Complex Shapes. - Aleksandra Melnikova; Petr Matula (ISBI, 2021)

Cell Tracking Based on Integer Linear Programming and Probability Scores. - Filip Lux; Petr Matula (ISBI, 2024)

Study of Shape Fusion Algorithms for 3D Time-Lapse Microscopy. - Aleksandra Melnikova; Petr Matula (ISBI, 2025)

Bio-Volumentations: A Python library for augmentation of volumetric image sequences. - Lucia Hradecká; Filip Lux; Samuel Sul'an; Petr Matula (SoftwareX, 2025)