Computability of Width of Submodular Partition Functions. - Petr Skoda 001 (IWOCA, 2009)

Chemical space visualization using ViFrame. - Petr Skoda 001; David Hoksza (ICIS, 2013)

Scaffold-based chemical space exploration. - David Hoksza; Petr Skoda 001 (BIBM, 2014)

UnifiedViews: An ETL Framework for Sustainable RDF Data Processing. - Tomás Knap; Maria Kukhar; Bohuslav Machác; Petr Skoda 001; Jirí Tomes; Ján Vojt (ESWC (Satellite Events), 2014)

2D Pharmacophore Query Generation. - David Hoksza; Petr Skoda 001 (ISBRA, 2014)

Molpher: a software framework for systematic chemical space exploration. - David Hoksza; Petr Skoda 001; Milan Vorsilák; Daniel Svozil (J. Cheminformatics, 2014)

Exploration of topological torsion fingerprints. - Petr Skoda 001; David Hoksza (BIBM, 2015)

UnifiedViews: Towards ETL Tool for Simple yet Powerfull RDF Data Management. - Tomás Knap; Petr Skoda 001; Jakub Klímek; Martin Necaský (DATESO, 2015)

Benchmarking platform for ligand-based virtual screening. - Petr Skoda 001; David Hoksza (BIBM, 2016)

Using Bayesian modeling on molecular fragments features for virtual screening. - David Hoksza; Petr Skoda 001 (CIBCB, 2016)

LinkedPipes ETL: Evolved Linked Data Preparation. - Jakub Klímek; Petr Skoda 001; Martin Necaský (ESWC (Satellite Events), 2016)

Reusable transformations of Data Cube Vocabulary datasets from the fiscal domain. - Jindrich Mynarz; Jakub Klímek; Marek Dudás; Petr Skoda 001; Christiane Engels; Fathoni A. Musyaffa; Vojtech Svátek (SemStats@ISWC, 2016)

Requirements on Linked Data Consumption Platform. - Jakub Klímek; Petr Skoda 001; Martin Necaský (LDOW@WWW, 2016)

Improving quality of ligand-binding site prediction with Bayesian optimization. - Radoslav Krivák; David Hoksza; Petr Skoda 001 (BIBM, 2017)

Platform for ligand-based virtual screening integration. - Petr Skoda 001; David Hoksza; Jan Jelínek (BIBM, 2017)

Practical Use Cases for Linked Open Data in eGovernment Demonstrated on the Czech Republic. - Martin Necaský; Jakub Klímek; Petr Skoda 001 (EGOVIS, 2017)

LinkedPipes ETL in use: practical publication and consumption of linked data. - Jakub Klímek; Petr Skoda 001 (iiWAS, 2017)

Speeding up Publication of Linked Data Using Data Chunking in LinkedPipes ETL. - Jakub Klímek; Petr Skoda 001 (OTM Conferences (2), 2017)

Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites. - Jan Jelínek; Petr Skoda 001; David Hoksza (BMC Bioinform., 2017)

Software framework for similarity-based prediction of protein interfaces. - Jan Jelínek; Petr Skoda 001; David Hoksza (BIBM, 2018)

LinkedPipes DCAT-AP Viewer: A Native DCAT-AP Data Catalog. - Jakub Klímek; Petr Skoda 001 (ISWC (P&D/Industry/BlueSky), 2018)

UnifiedViews: An ETL tool for RDF data management. - Tomás Knap; Peter Hanecák; Jakub Klímek; Christian Mader; Martin Necaský; Bert Van Nuffelen; Petr Skoda 001 (Semantic Web, 2018)

Explainable Similarity of Datasets Using Knowledge Graph. - Petr Skoda 001; Jakub Klímek; Martin Necaský; Tomás Skopal (SISAP, 2019)

PrankWeb: a web server for ligand binding site prediction and visualization. - Lukás Jendele; Radoslav Krivák; Petr Skoda 001; Marian Novotny; David Hoksza (Nucleic Acids Res., 2019)

Survey of tools for Linked Data consumption. - Jakub Klímek; Petr Skoda 001; Martin Necaský (Semantic Web, 2019)

Open IE-Triples Inference - Corpora Development and DNN Architectures. - Martin Víta; Petr Skoda 001 (FedCSIS, 2020)

Evaluation Framework for Search Methods Focused on Dataset Findability in Open Data Catalogs. - Petr Skoda 001; David Bernhauer; Martin Necaský; Jakub Klímek; Tomás Skopal (iiWAS, 2020)

Visualizer of Dataset Similarity Using Knowledge Graph. - Petr Skoda 001; Jakub Matejík; Tomás Skopal (SISAP, 2020)

PDBe-KB: a community-driven resource for structural and functional annotations. - Mihaly Varadi; John M. Berrisford; Mandar S. Deshpande; Sreenath Nair; Aleksandras Gutmanas; David R. Armstrong; Lukás Pravda; Bissan Al-Lazikani; Stephen Anyango; Geoffrey J. Barton; Karel Berka; Tom L. Blundell; et al. (Nucleic Acids Res., 2020)

Similarity vs. Relevance: From Simple Searches to Complex Discovery. - Tomás Skopal; David Bernhauer; Petr Skoda 001; Jakub Klímek; Martin Necaský (SISAP, 2021)

DataSpecer: A Model-Driven Approach to Managing Data Specifications. - Stepán Stenchlák; Martin Necaský; Petr Skoda 001; Jakub Klímek (ESWC (Satellite Events), 2022)

Open dataset discovery using context-enhanced similarity search. - David Bernhauer; Martin Necaský; Petr Skoda 001; Jakub Klímek; Tomás Skopal (Knowl. Inf. Syst., 2022)

PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures. - David Jakubec; Petr Skoda 001; Radoslav Krivák; Marian Novotny; David Hoksza (Nucleic Acids Res., 2022)

PDBe-KB: collaboratively defining the biological context of structural data. - Mihaly Varadi; Stephen Anyango; David R. Armstrong; John M. Berrisford; Preeti Choudhary; Mandar S. Deshpande; Nurul Nadzirin; Sreenath Nair; Lukás Pravda; Ahsan Tanweer; Bissan Al-Lazikani; Claudia Andreini; et al. (Nucleic Acids Res., 2022)

Modular framework for similarity-based dataset discovery using external knowledge. - Martin Necaský; Petr Skoda 001; David Bernhauer; Jakub Klímek; Tomás Skopal (Data Technol. Appl., 2022)

Atlas: A Toolset for Efficient Model-Driven Data Exchange in Data Spaces. - Jakub Klímek; Pavel Koupil; Petr Skoda 001; Jáchym Bártík; Stepán Stenchlák; Martin Necaský; Irena Holubová (MoDELS (Companion), 2023)

Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. - Jiaoyan Chen 001; Hang Dong 002; Janna Hastings; Ernesto Jiménez-Ruiz; Vanessa López; Pierre Monnin; Catia Pesquita; Petr Skoda 001; Valentina Tamma (TGDK, 2023)

Enhancing Domain Modeling with Pre-trained Large Language Models: An Automated Assistant for Domain Modelers. - Dominik Prokop; Stepán Stenchlák; Petr Skoda 001; Jakub Klímek; Martin Necaský (ER, 2024)

Towards Authoring of Vocabularies and Application Profiles using Dataspecer. - Jakub Klímek; Stepán Stenchlák; Adam Polický; Petr Skoda 001; Martin Necaský (ISWC (Posters/Demos/Industry), 2024)

Semantic Web: Past, Present, and Future. - Ansgar Scherp; Gerd Gröner; Petr Skoda 001; Katja Hose; Maria-Esther Vidal (TGDK, 2024)