Theme discovery from gene lists for identification and viewing of multiple functional groups. - Petri Pehkonen; Garry Wong; Petri Törönen (BMC Bioinform., 2005)

POXO: a web-enabled tool series to discover transcription factor binding sites. - Matti Kankainen; Petri Pehkonen; Päivi Rosenström; Petri Törönen; Garry Wong; Liisa Holm (Nucleic Acids Res., 2006)

Construction and use of gene expression covariation matrix. - Jérôme Hennetin; Petri Pehkonen; Michel Bellis (BMC Bioinform., 2009)

Generation of Gene Ontology benchmark datasets with various types of positive signal. - Petri Törönen; Petri Pehkonen; Liisa Holm (BMC Bioinform., 2009)

Heuristic Bayesian Segmentation for Discovery of Coexpressed Genes within Genomic Regions. - Petri Pehkonen; Garry Wong; Petri Törönen (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

TAFFEL: Independent Enrichment Analysis of gene sets. - Mitja I. Kurki; Jussi Paananen; Markus Storvik; Seppo Ylä-Herttuala; Juha E. Jääskeläinen; Mikael von und zu Fraunberg; Garry Wong; Petri Pehkonen (BMC Bioinform., 2011)