DSAP: deep-sequencing small RNA analysis pipeline. - Po-Jung Huang; Yi-Chung Liu; Chi-Ching Lee; Wei-Chen Lin; Richie Ruei-Chi Gan; Ping-Chiang Lyu; Petrus Tang (Nucleic Acids Res., 2010)

CMPD: cancer mutant proteome database. - Po-Jung Huang; Chi-Ching Lee; Bertrand Chin-Ming Tan; Yuan-Ming Yeh; Lichieh Julie Chu; Ting-Wen Chen; Kai-Ping Chang; Cheng-Yang Lee; Richie Ruei-Chi Gan; Hsuan Liu; Petrus Tang (Nucleic Acids Res., 2015)

Impedimetric quantification of the density of suspending Trichomonas vaginalis. - Ming-Jei Chen; Chia-Hao Huang; Kin Fong Lei; Wei-Hung Cheng; Petrus Tang (NEMS, 2016)

PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms. - Richie Ruei-Chi Gan; Ting-Wen Chen; Timothy H. Wu; Po-Jung Huang; Chi-Ching Lee; Yuan-Ming Yeh; Cheng-Hsun Chiu; Hsien-Da Huang; Petrus Tang (BMC Bioinform., 2016)

VAReporter: variant reporter for cancer research of massive parallel sequencing. - Po-Jung Huang; Chi-Ching Lee; Ling-Ya Chiu; Kuo-Yang Huang; Yuan-Ming Yeh; Chia-Yu Yang; Cheng-Hsun Chiu; Petrus Tang (BMC Genom., 2018)

mSignatureDB: a database for deciphering mutational signatures in human cancers. - Po-Jung Huang; Ling-Ya Chiu; Chi-Ching Lee; Yuan-Ming Yeh; Kuo-Yang Huang; Cheng-Hsun Chiu; Petrus Tang (Nucleic Acids Res., 2018)

Pathogenic Protist Transmembranome database (PPTdb): a web-based platform for searching and analysis of protist transmembrane proteins. - Chi-Ching Lee; Po-Jung Huang; Yuan-Ming Yeh; Sin-You Chen; Cheng-Hsun Chiu; Wei-Hung Cheng; Petrus Tang (BMC Bioinform., 2019)

DeepVariant-on-Spark: Small-Scale Genome Analysis Using a Cloud-Based Computing Framework. - Po-Jung Huang; Jui-Huan Chang; Hou-Hsien Lin; Yu-Xuan Li; Chi-Ching Lee; Chung-Tsai Su; Yun-Lung Li; Ming-Tai Chang; Sid Weng; Wei-Hung Cheng; Cheng-Hsun Chiu; Petrus Tang (Comput. Math. Methods Medicine, 2020)