Typing Staphylococcus aureus Using the spa Gene and Novel Distance Measures. - Phaedra Agius; Barry Kreiswirth; Steve Naidich; Kristin P. Bennett (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Multiway modeling and analysis in stem cell systems biology. - Bülent Yener; Evrim Acar; Phaedra Agius; Kristin P. Bennett; Scott L. Vandenberg; George E. Plopper (BMC Syst. Biol., 2008)

High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions. - Phaedra Agius; Aaron Arvey; William Chang; William Stafford Noble; Christina S. Leslie (PLoS Comput. Biol., 2010)

SCANVIS: a tool for SCoring, ANnotating and VISualizing splice junctions. - Phaedra Agius; Heather Geiger; Nicolas Robine (Bioinform., 2019)