Visualizing Diffusion-Weighted MRI Data Using Collaborative Virtual Environment and Grid Technologies. - Anthony Steed; Daniel C. Alexander; Philip A. Cook; Chris Parker (TPCG, 2003)

Modelling Noise-Induced Fibre-Orientation Error in Diffusion-Tensor MRI. - Philip A. Cook; Daniel C. Alexander; Geoffrey J. M. Parker (ISBI, 2004)

An Automated Approach to Connectivity-Based Partitioning of Brain Structures. - Philip A. Cook; Hui Zhang 005; Brian B. Avants; Paul A. Yushkevich; Daniel C. Alexander; James C. Gee; Olga Ciccarelli; Alan J. Thompson (MICCAI, 2005)

Exploiting peak anisotropy for tracking through complex structures. - Kiran K. Seunarine; Philip A. Cook; Matt G. Hall; Karl V. Embleton; Geoffrey J. M. Parker; Daniel C. Alexander (ICCV, 2007)

Evaluation of Shape-Based Normalization in the Corpus Callosum for White Matter Connectivity Analysis. - Hui Sun; Paul A. Yushkevich; Hui Zhang 005; Philip A. Cook; Jeffrey T. Duda; Tony J. Simon; James C. Gee (MICCAI (2), 2007)

Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis. - Hui Sun; Paul A. Yushkevich; Hui Zhang 005; Philip A. Cook; Jeffrey T. Duda; Tony J. Simon; James C. Gee (IEEE Trans. Medical Imaging, 2007)

Atlas-guided probabilistic diffusion-tensor fiber tractography. - Philip A. Cook; Hui Zhang 005; Suyash P. Awate; James C. Gee (ISBI, 2008)

A Comparison of Methods for Recovering Intra-voxel White Matter Fiber Architecture from Clinical Diffusion Imaging Scans. - Alonso Ramirez-Manzanares; Philip A. Cook; James C. Gee (MICCAI (1), 2008)

Sparse Unbiased Analysis of Anatomical Variance in Longitudinal Imaging. - Brian B. Avants; Philip A. Cook; Corey McMillan; Murray Grossman; Nicholas J. Tustison; Yuanjie Zheng; James C. Gee (MICCAI (1), 2010)

Dementia induces correlated reductions in white matter integrity and cortical thickness: A multivariate neuroimaging study with sparse canonical correlation analysis. - Brian B. Avants; Philip A. Cook; Lyle H. Ungar; James C. Gee; Murray Grossman (NeuroImage, 2010)

N4ITK: Improved N3 Bias Correction. - Nicholas J. Tustison; Brian B. Avants; Philip A. Cook; Yuanjie Zheng; Alexander Egan; Paul A. Yushkevich; James C. Gee (IEEE Trans. Medical Imaging, 2010)

A reproducible evaluation of ANTs similarity metric performance in brain image registration. - Brian B. Avants; Nicholas J. Tustison; Gang Song; Philip A. Cook; Arno Klein; James C. Gee (NeuroImage, 2011)

An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data. - Brian B. Avants; Nicholas J. Tustison; Jue Wu; Philip A. Cook; James C. Gee (Neuroinformatics, 2011)

Eigenanatomy Improves Detection Power for Longitudinal Cortical Change. - Brian B. Avants; Paramveer S. Dhillon; Benjamin M. Kandel; Philip A. Cook; Corey McMillan; Murray Grossman; James C. Gee (MICCAI (3), 2012)

Heteromodal conceptual processing in the angular gyrus. - Michael F. Bonner; Jonathan E. Peelle; Philip A. Cook; Murray Grossman (NeuroImage, 2013)

Category-specific semantic memory: Converging evidence from bold fMRI and Alzheimer's disease. - Murray Grossman; Jonathan E. Peelle; Edward E. Smith; Corey McMillan; Philip A. Cook; John P. Powers; Michael Dreyfuss; Michael F. Bonner; Lauren L. Richmond; Ashley Boller; Emily Camp; Lisa Burkholder (NeuroImage, 2013)

Reproducibility of graph metrics of human brain structural networks. - Jeffrey T. Duda; Philip A. Cook; James C. Gee (Frontiers Neuroinformatics, 2014)

Relating brain anatomy and cognitive ability using a multivariate multimodal framework. - Philip A. Cook; Corey T. McMillan; Brian B. Avants; Jonathan E. Peelle; James C. Gee; Murray Grossman (NeuroImage, 2014)

Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements. - Nicholas J. Tustison; Philip A. Cook; Arno Klein; Gang Song; Sandhitsu R. Das; Jeffrey T. Duda; Benjamin M. Kandel; Niels van Strien; James R. Stone; James C. Gee; Brian B. Avants (NeuroImage, 2014)

The impact of in-scanner head motion on structural connectivity derived from diffusion MRI. - Graham L. Baum; David R. Roalf; Philip A. Cook; Rastko Ciric; Adon F. G. Rosen; Cedric Xia; Mark A. Elliott; Kosha Ruparel; Ragini Verma; Birkan Tunç; Ruben C. Gur; Raquel E. Gur; et al. (NeuroImage, 2018)

Harmonization of cortical thickness measurements across scanners and sites. - Jean-Philippe Fortin; Nicholas C. Cullen; Yvette I. Sheline; Warren D. Taylor; Irem Aselcioglu; Philip A. Cook; Phil Adams; Crystal Cooper; Maurizio Fava; Patrick J. McGrath; Melvin G. McInnis; Mary L. Phillips; et al. (NeuroImage, 2018)

Quantitative assessment of structural image quality. - Adon F. G. Rosen; David R. Roalf; Kosha Ruparel; Jason Blake; Kevin Seelaus; Lakshmi P. Villa; Rastko Ciric; Philip A. Cook; Christos Davatzikos; Mark A. Elliott; Angel Garcia de La Garza; Efstathios D. Gennatas; et al. (NeuroImage, 2018)

Longitudinal ComBat: A method for harmonizing longitudinal multi-scanner imaging data. - Joanne C. Beer; Nicholas J. Tustison; Philip A. Cook; Christos Davatzikos; Yvette I. Sheline; Russell T. Shinohara; Kristin A. Linn (NeuroImage, 2020)

FlywheelTools: Data Curation and Manipulation on the Flywheel Platform. - Tinashe M. Tapera; Matthew Cieslak; Max Bertolero; Azeez Adebimpe; Geoffrey Karl Aguirre; Ellyn R. Butler; Philip A. Cook; Diego Davila; Mark A. Elliott; Sophia Linguiti; Kristin Murtha; William Tackett; et al. (Frontiers Neuroinformatics, 2021)

Comparison of Anatomical and Diffusion MRI for detecting Parkinson's Disease using Deep Convolutional Neural Network. - Tamoghna Chattopadhyay; Amit Singh; Emily Laltoo; Christina P. Boyle; Conor Owens-Walton; Yao-Liang Chen; Philip A. Cook; Corey McMillan; Chih-Chien Tsai; Jiun-Jie Wang; Yih-Ru Wu; Ysbrand D. van der Werf; et al. (EMBC, 2023)

Curriculum Based Multi-Task Learning for Parkinson's Disease Detection. - Nikhil J. Dhinagar; Conor Owens-Walton; Emily Laltoo; Christina P. Boyle; Yao-Liang Chen; Philip A. Cook; Corey McMillan; Chih-Chien Tsai; Jiun-Jie Wang; Yih-Ru Wu; Ysbrand D. van der Werf; Paul M. Thompson (ISBI, 2023)

Video and Synthetic MRI Pre-training of 3D Vision Architectures for Neuroimage Analysis. - Nikhil J. Dhinagar; Amit Singh; Saket Ozarkar; Ketaki Buwa; Sophia I. Thomopoulos; Conor Owens-Walton; Emily Laltoo; Yao-Liang Chen; Philip A. Cook; Corey McMillan; Chih-Chien Tsai; Jiun-Jie Wang; et al. (CoRR, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2025)