Facilitating data-intensive science with RAM disk and Hadoop on large shared-memory systems. - Bryon Gill; Philip D. Blood; Chad Vizino (TG, 2011)

Extending parallel scalability of LAMMPS and multiscale reactive molecular simulations. - Yuxing Peng 002; Chris Knight 001; Philip D. Blood; Lonnie D. Crosby; Gregory A. Voth (XSEDE, 2012)

Enabling large-scale next-generation sequence assembly with Blacklight. - M. Brian Couger; Lenore Pipes; Philip D. Blood; Christopher E. Mason (XSEDE, 2013)

National Center for Genome Analysis support leverages XSEDE to support life science research. - Richard D. LeDuc; Thomas G. Doak; Le-Shin Wu; Philip D. Blood; Carrie L. Ganote; Matthew Vaughn (XSEDE, 2013)

A sustainable national gateway for biological computation. - James Taylor 001; Anton Nekrutenko; Nathan Coraor; Philip D. Blood; Alex Ropelewski; Zhihui Zhang; Josephine Palencia; Sergiu Sanielevici; Jared Yanovich; Robert Budden (XSEDE, 2013)

The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics. - Lenore Pipes; Sheng Li; Marjan Bozinoski; Robert Palermo; Xinxia Peng; Philip D. Blood; Sara Kelly; Jeffrey M. Weiss; Jean Thierry-Mieg; Danielle Thierry-Mieg; Paul Zumbo; Ronghua Chen; et al. (Nucleic Acids Res., 2013)

Large-scale Sequencing and Assembly of Cereal Genomes Using Blacklight. - Philip D. Blood; Shoshana Marcus; Michael C. Schatz (XSEDE, 2014)

Enabling large-scale next-generation sequence assembly with Blacklight. - M. Brian Couger; Lenore Pipes; Fabio Squina; Rolf Prade; Adam C. Siepel; Robert Palermo; Michael G. Katze; Christopher E. Mason; Philip D. Blood (Concurr. Comput. Pract. Exp., 2014)

Leveraging the national cyberinfrastructure for biomedical research. - Richard D. LeDuc; Matthew Vaughn; John M. Fonner; Michael Sullivan; James G. Williams 003; Philip D. Blood; James Taylor 001; William K. Barnett (J. Am. Medical Informatics Assoc., 2014)

NCBI-BLAST programs optimization on XSEDE resources for sustainable aquaculture. - Arun S. Seetharam; Antonio Gómez-Iglesias; Catherine M. Purcell; John R. Hyde; Philip D. Blood; Andrew J. Severin (XSEDE, 2015)

Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data. - Noushin Ghaffari; Jordi Abante; Raminder Singh; Philip D. Blood; Charles D. Johnson (XSEDE, 2016)

Demonstrating Distributed Workflow Computing with a Federating Wide-Area File System. - Philip D. Blood; Anjana Kar; Jason Sommerfield; Beth Lynn Eicher; Richard Angeletti; J. Ray Scott (PEARC, 2017)

A Voice for Bioinformatics. - Carrie L. Ganote; Sheri A. Sanders; Bhavya Nalagampalli Papudeshi; Philip D. Blood; Thomas G. Doak (PEARC, 2017)

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. - Michael P. Snyder; Shin Lin; Amanda Posgai; Mark Atkinson; Aviv Regev; Jennifer Rood; Orit Rozenblatt-Rosen; Leslie Gaffney; Anna Hupalowska; Rahul Satija; Nils Gehlenborg; Jay Shendure; et al. (Nat., 2019)

Metrics of financial effectiveness: Return On Investment in XSEDE, a national cyberinfrastructure coordination and support organization. - Craig A. Stewart; Claudia M. Costa; Julie A. Wernert; David Y. Hancock; Donald F. McMullen; Philip D. Blood; Robert S. Sinkovits; Susan Mehringer; Richard Knepper; Jeremy Fischer; Marques Bland; Gary L. Rogers; et al. (PEARC, 2022)

Use of accounting concepts to study research: return on investment in XSEDE, a US cyberinfrastructure service. - Craig A. Stewart; Claudia M. Costa; Julie A. Wernert; Winona Snapp-Childs; Marques Bland; Philip D. Blood; Terry Campbell; Peter Couvares; Jeremy Fischer; David Y. Hancock; David L. Hart; Harmony Jankowski; et al. (Scientometrics, 2023)

Playbook workflow builder: Interactive construction of bioinformatics workflows. - Daniel J. B. Clarke; John Erol Evangelista; Zhuorui Xie; Giacomo B. Marino; Anna I. Byrd; Mano Ram Maurya; Sumana Srinivasan; Keyang Yu; Varduhi Petrosyan; Matthew E. Roth; Miroslav Milinkov; Charles Hadley King; et al. (PLoS Comput. Biol., 2025)