Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag. - Jonathan M. Carlson; Zabrina L. Brumme; Christine M. Rousseau; Chanson J. Brumme; Philippa Matthews; Carl Myers Kadie; James I. Mullins; Bruce D. Walker; P. Richard Harrigan; Philip J. R. Goulder; David Heckerman (PLoS Comput. Biol., 2008)

Statistical Resolution of Ambiguous HLA Typing Data. - Jennifer Listgarten; Zabrina L. Brumme; Carl Myers Kadie; Gao Xiaojiang; Bruce D. Walker; Mary Carrington; Philip J. R. Goulder; David Heckerman (PLoS Comput. Biol., 2008)

IVA: accurate de novo assembly of RNA virus genomes. - Martin Hunt; Astrid Gall; Swee Hoe Ong; Jacqui Brener; Bridget Ferns; Philip J. R. Goulder; Eleni Nastouli; Jacqueline A. Keane; Paul Kellam; Thomas D. Otto (Bioinform., 2015)