FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms. - Kristin Verena Kaltdorf; Katja Schulze; Frederik Helmprobst; Philip Kollmannsberger; Thomas Dandekar; Christian Stigloher (PLoS Comput. Biol., 2017)

DeepCLEM: automated registration for correlative light and electron microscopy using deep learning. - Rick Seifert; Sebastian M. Markert; Sebastian Britz; Veronika Perschin; Christoph Erbacher; Christian Stigloher; Philip Kollmannsberger (F1000Research, 2020)

Biological network growth in complex environments: A computational framework. - Torsten Johann Paul; Philip Kollmannsberger (PLoS Comput. Biol., 2020)

Fourier Ring Correlation and Anisotropic Kernel Density Estimation Improve Deep Learning Based SMLM Reconstruction of Microtubules. - Andreas Berberich; Andreas Kurz; Sebastian Reinhard; Torsten Johann Paul; Paul Ray Burd; Markus Sauer; Philip Kollmannsberger (Frontiers Bioinform., 2021)

ReCSAI: recursive compressed sensing artificial intelligence for confocal lifetime localization microscopy. - Sebastian Reinhard; Dominic A. Helmerich; Dominik Boras; Markus Sauer; Philip Kollmannsberger (BMC Bioinform., 2022)

Automated segmentation of the dorsal root ganglia in MRI. - Aliya C. Nauroth-Kreß; Simon Weiner; Lea Hölzli; Thomas Kampf; György A. Homola; Mirko Pham; Philip Kollmannsberger; Magnus Schindehütte (NeuroImage, 2025)