Modeling the invasion and spread of contagious diseases in heterogeneous populations. - Wayne M. Getz; James O. Lloyd-Smith; Paul C. Cross; Shirli Bar-David; Philip L. F. Johnson; Travis C. Porco; Marís S. Sánchez (Disease Evolution: Models, Concepts, and Data Analyses, 2006)

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters. - Hákon Jónsson; Aurelien Ginolhac; Mikkel Schubert; Philip L. F. Johnson; Ludovic Orlando (Bioinform., 2013)

Exploring the functional composition of the human microbiome using a hand-curated microbial trait database. - J. L. Weissman; Sonia Dogra; Keyan Javadi; Samantha Bolten; Rachel Flint; Cyrus Davati; Jess Beattie; Keshav Dixit; Tejasvi Peesay; Shehar Awan; Peter Thielen; Florian P. Breitwieser; et al. (BMC Bioinform., 2021)

Dynamics and turnover of memory CD8 T cell responses following yellow fever vaccination. - Veronika Zarnitsyna; Rama S. Akondy; Hasan Ahmed; Donald J. McGuire; Vladimir G. Zarnitsyn; Mia Moore; Philip L. F. Johnson; Rafi Ahmed; Kelvin W. Li; Marc K. Hellerstein; Rustom Antia (PLoS Comput. Biol., 2021)