CRC Tissue Core Management System (TCMS): Integration of Basic Science and Clinical Data for Translational Research. - Andrew W. Greaves; Philip R. O. Payne; Laura Rassenti; Thomas J. Kipps (AMIA, 2003)

CRC Clinical Trials Management System (CTMS): An Integrated Information Management Solution for Collaborative Clinical Research. - Philip R. O. Payne; Andrew W. Greaves; Thomas J. Kipps (AMIA, 2003)

Quantifying Visual Similarity in Clinical Iconic Graphics. - Justin B. Starren; Philip R. O. Payne (AMIA, 2003)

Research Paper: Quantifying Visual Similarity in Clinical Iconic Graphics. - Philip R. O. Payne; Justin Starren (J. Am. Medical Informatics Assoc., 2005)

Novel Techniques for Survey and Classification Studies to Improve Patient Centered Websites. - Amy E. Chused; Philip R. O. Payne; Justin B. Starren (AMIA, 2006)

Coverage of Clinical Trials Tasks in Existing Ontologies. - James R. Deitzer; Philip R. O. Payne; Justin B. Starren (AMIA, 2006)

Modeling Clinical Trials Workflow in Community Practice Settings. - Sharib A. Khan; Philip R. O. Payne; Stephen B. Johnson; J. Thomas Bigger; Rita Kukafka (AMIA, 2006)

Consensus-based Construction of a Taxonomy of Clinical Trial Tasks. - Philip R. O. Payne; James R. Deitzer; Eneida A. Mendonça; Justin B. Starren (AMIA, 2006)

Human Computer Interaction Issues in Clinical Trials Management Systems. - Justin B. Starren; Philip R. O. Payne; David R. Kaufman (AMIA, 2006)

Presentation discovery: building a better icon. - Philip R. O. Payne; Justin Starren (CHI Extended Abstracts, 2006)

Impact measures for libraries and information services. - Roswitha Poll; Philip R. O. Payne (Libr. Hi Tech, 2006)

Identifying Challenges and Opportunities in Clinical Research Informatics: Analysis of a Facilitated Discussion at the 2006 AMIA Annual Symposium. - Peter J. Embí; Philip R. O. Payne; Stanley E. Kaufman; Judith R. Logan; Charles E. Barr (AMIA, 2007)

Modeling Participant-Related Clinical Research Events Using Conceptual Knowledge Acquisition Techniques. - Philip R. O. Payne; Eneida A. Mendonça; Justin B. Starren (AMIA, 2007)

A Day in the Life of a Clinical Research Coordinator: Observations from Community Practice Settings. - Sharib A. Khan; Rita Kukafka; Philip R. O. Payne; J. Thomas Bigger; Stephen B. Johnson (MedInfo, 2007)

Conceptual knowledge acquisition in biomedicine: A methodological review. - Philip R. O. Payne; Eneida A. Mendonça; Stephen B. Johnson; Justin Starren (J. Biomed. Informatics, 2007)

Supporting the Design of Translational Clinical Studies through the Generation and Verification of Conceptual Knowledge-anchored Hypotheses. - Philip R. O. Payne; Tara Borlawsky; Alan Kwok; Andrew W. Greaves (AMIA, 2008)

A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research. - Joel H. Saltz; Shannon Hastings; Stephen Langella; Scott Oster; Tahsin M. Kurç; Philip R. O. Payne; Renato Ferreira 001; Beth Plale; Carole A. Goble; David Ervin; Ashish Sharma 001; Tony Pan; et al. (HealthGrid, 2008)

e-Science, caGrid, and Translational Biomedical Research. - Joel H. Saltz; Tahsin M. Kurç; Shannon Hastings; Stephen Langella; Scott Oster; David Ervin; Ashish Sharma 001; Tony Pan; Metin N. Gurcan; Justin Permar; Renato Ferreira 001; Philip R. O. Payne; et al. (Computer, 2008)

Clinical Attribute Network for Chronic Lymphocytic Leukemia. - Abhisek Kundu; Hatice Gulcin Ozer; Tara Borlawsky; Kristin C. Circle; Kun Huang 001; Philip R. O. Payne (BIBM, 2009)

Research Paper: Clinical Research Informatics: Challenges, Opportunities and Definition for an Emerging Domain. - Peter J. Embí; Philip R. O. Payne (J. Am. Medical Informatics Assoc., 2009)

A Knowledge-Anchored Integrative Image Search and Retrieval System. - Selnur Erdal; Ümit V. Çatalyürek; Philip R. O. Payne; Joel H. Saltz; Jyoti Kamal; Metin N. Gurcan (J. Digit. Imaging, 2009)

Multi-dimensional discovery of biomarker and phenotype complexes. - Philip R. O. Payne; Kun Huang 001; Kristin Keen-Circle; Abhisek Kundu; Jie Zhang 010; Tara Borlawsky (BMC Bioinform., 2010)

Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia. - Jie Zhang 010; Yang Xiang; Liya Ding 001; Kristin Keen-Circle; Tara Borlawsky; Hatice Gulcin Ozer; Ruoming Jin; Philip R. O. Payne; Kun Huang 001 (BMC Bioinform., 2010)

Foundational biomedical informatics research in the clinical and translational science era: a call to action. - Philip R. O. Payne; Peter J. Embí; Joyce C. Niland (J. Am. Medical Informatics Assoc., 2010)

The TOKEn project: knowledge synthesis for in silico science. - Philip R. O. Payne; Tara Borlawsky; Omkar Lele; Stephen L. James; Andrew W. Greaves (J. Am. Medical Informatics Assoc., 2011)

Research-IQ: Development and evaluation of an ontology-anchored integrative query tool. - Tara Borlawsky; Omkar Lele; Philip R. O. Payne (J. Biomed. Informatics, 2011)

Selected Papers from the 2011 Summit on Clinical Research Informatics. - Philip R. O. Payne; Peter J. Embí; Michael G. Kahn (J. Biomed. Informatics, 2011)

The joint summits on translational science: Crossing the translational chasm. - Indra Neil Sarkar; Philip R. O. Payne (J. Biomed. Informatics, 2011)

Development of an Informatics-Based Predictive Model for 30-Day Readmission Customized for a Single Hospital System. - Courtney Hebert; Jared Wasserman; Randi E. Foraker; Stanley Lemeshow; Hagop S. Mekhjian; Philip R. O. Payne; Peter J. Embí (AMIA, 2012)

ResearchIQ: An Ontology-anchored Knowledge and Resource Discovery Tool. - Omkar Lele; Satyajeet Raje; Po-Yin Yen; Tara Borlawsky; Philip R. O. Payne (AMIA, 2012)

Time Capture Tool (TimeCaT): Development of a Comprehensive Application to Support Data Capture for Time Motion Studies. - Marcelo A. Lopetegui; Po-Yin Yen; Albert M. Lai; Peter J. Embí; Philip R. O. Payne (AMIA, 2012)

CohortIQ: An Integrative Bio-specimen Discovery and Annotation Portal. - Philip R. O. Payne; Arka Pattanayak; Shubhanan Deshpande; David Ervin (AMIA, 2012)

Applying knowledge-anchored hypothesis discovery methods to advance clinical and translational research: the OAMiner project. - Philip R. O. Payne; Rebecca D. Jackson; Thomas M. Best; Tara Borlawsky; Albert M. Lai; Stephen L. James; Metin N. Gurcan (J. Am. Medical Informatics Assoc., 2012)

k-Neighborhood decentralization: A comprehensive solution to index the UMLS for large scale knowledge discovery. - Yang Xiang; Kewei Lu; Stephen L. James; Tara Borlawsky; Kun Huang 001; Philip R. O. Payne (J. Biomed. Informatics, 2012)

Computational challenges and human factors influencing the design and use of clinical research participant eligibility pre-screening tools. - Taylor R. Pressler; Po-Yin Yen; Jing Ding; Jianhua Liu; Peter J. Embí; Philip R. O. Payne (BMC Medical Informatics Decis. Mak., 2012)

Chapter 1: Biomedical Knowledge Integration. - Philip R. O. Payne (PLoS Comput. Biol., 2012)

Transactional Database Transformation and Its Application in Prioritizing Human Disease Genes. - Yang Xiang; Philip R. O. Payne; Kun Huang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Utilization of Hadoop Framework to Enable Semantic Search over Big Data. - Omkar Lele; Puneet Mathur; Sandeep Chatra Raveesh; Satyajeet Raje; Tara Borlawsky; Philip R. O. Payne (AMIA, 2013)

Inter-Observer Reliability Assessments in Time Motion Studies: The Foundation for Meaningful Clinical Workflow Analysis. - Marcelo A. Lopetegui; Shasha Bai; Po-Yin Yen; Albert M. Lai; Peter J. Embí; Philip R. O. Payne (AMIA, 2013)

Enabling Integrative Auditing and Reporting for the TRITON Platform using Big Data Technologies. - William Stephens; Tara Borlawsky; Philip R. O. Payne (AMIA, 2013)

Research Informatics : Re-engineering the Research Enterprise. - Mark G. Weiner; Philip R. O. Payne; Peter J. Embí; Shawn N. Murphy (AMIA, 2013)

TimeCaT: a Comprehensive Tool for Time Motion Studies. - Marcelo A. Lopetegui; Po-Yin Yen; Albert M. Lai; Peter J. Embí; Philip R. O. Payne (MedInfo, 2013)

People, organizational, and leadership factors impacting informatics support for clinical and translational research. - Philip R. O. Payne; Taylor R. Pressler; Indra Neil Sarkar; Yves A. Lussier (BMC Medical Informatics Decis. Mak., 2013)

Lessons Learned Bringing Public Health into the Primary Care Clinic through an EHR-based Application. - Caryn Roth; Randi E. Foraker; Marcelo A. Lopetegui; Philip R. O. Payne (AMIA, 2014)

Towards Symbiosis in Knowledge Representation and Natural Language Processing for Structuring Clinical Practice Guidelines. - Chunhua Weng; Philip R. O. Payne; Mark Velez; Stephen B. Johnson; Suzanne Bakken (Nursing Informatics, 2014)

Advancing methodologies in Clinical Research Informatics (CRI): Foundational work for a maturing field. - Peter J. Embí; Philip R. O. Payne (J. Biomed. Informatics, 2014)

Time motion studies in healthcare: What are we talking about? - Marcelo A. Lopetegui; Po-Yin Yen; Albert M. Lai; Joseph Jeffries; Peter J. Embí; Philip R. O. Payne (J. Biomed. Informatics, 2014)

Community-level determinants of obesity: harnessing the power of electronic health records for retrospective data analysis. - Caryn Roth; Randi E. Foraker; Philip R. O. Payne; Peter J. Embí (BMC Medical Informatics Decis. Mak., 2014)

Analysis of the Great Divide Between Cardiovascular Risk and Health Scores. - Bobbie Kite; Tasneem Motiwala; Philip R. O. Payne (AMIA, 2015)

A Novel Multiple Choice Question Generation Strategy: Alternative Uses for Controlled Vocabulary Thesauri in Biomedical-Sciences Education. - Marcelo A. Lopetegui; Barbara A. Lara; Po-Yin Yen; Ümit V. Çatalyürek; Philip R. O. Payne (AMIA, 2015)

RECRUIT: Roadmap to Enhance Clinical trial Recruitment Using Information Technology. - Tasneem Motiwala; Chaitanya P. Shivade; Satyajeet Raje; Albert M. Lai; Philip R. O. Payne (AMIA, 2015)

Text Mining and Data Modeling of Karyotypes to aid in Drug Repurposing Efforts. - Zachary B. Abrams; Andrea L. Peabody; Nyla A. Heerema; Philip R. O. Payne (MedInfo, 2015)

A Metadata based Knowledge Discovery Methodology for Seeding Translational Research. - Cartik R. Kothari; Philip R. O. Payne (MedInfo, 2015)

Domain Analysis of Integrated Data to Reduce Cost Associated with Liver Disease. - Tasneem Motiwala; Bobbie Kite; Kelly Regan; Gregg M. Gascon; Philip R. O. Payne (MedInfo, 2015)

Real-time Data Fusion Platforms: The Need of Multi-dimensional Data-driven Research in Biomedical Informatics. - Satyajeet Raje; Bobbie Kite; Jay Ramanathan; Philip R. O. Payne (MedInfo, 2015)

Conceptual Knowledge Discovery in Databases for Drug Combinations Predictions in Malignant Melanoma. - Kelly Regan; Satyajeet Raje; Cartik Saravanamuthu; Philip R. O. Payne (MedInfo, 2015)

Use of Administrative Data to Predict Risk of Liver Disease. - Tasneem Motiwala; Zachary B. Abrams; Kelly Regan; Bobbie Kite; Gregg M. Gascon; Philip R. O. Payne (CRI, 2016)

Using Karyotype Data for Automated Disease Classification: A Proof of Concept Demonstration. - Satyajeet Raje; Zachary B. Abrams; Kevin R. Coombes; Philip R. O. Payne (CRI, 2016)

Session Introduction. - Kelly Regan; Zachary B. Abrams; Michael F. Sharpnack; Arunima Srivastava; Kun Huang 001; Nigam Shah; Philip R. O. Payne (PSB, 2016)

'RE: fine drugs': an interactive dashboard to access drug repurposing opportunities. - Soheil Moosavinasab; Jeremy A. Patterson; Robert Strouse; Majid Rastegar-Mojarad; Kelly Regan; Philip R. O. Payne; Yungui Huang; Simon M. Lin (Database J. Biol. Databases Curation, 2016)

The geographic distribution of cardiovascular health in the stroke prevention in healthcare delivery environments (SPHERE) study. - Caryn Roth; Philip R. O. Payne; Rory C. Weier; Abigail B. Shoben; Erica N. Fletcher; Albert M. Lai; Marjorie M. Kelley; Jesse J. Plascak; Randi E. Foraker (J. Biomed. Informatics, 2016)

Rethinking the role and impact of health information technology: informatics as an interventional discipline. - Philip R. O. Payne; Yves A. Lussier; Randi E. Foraker; Peter J. Embí (BMC Medical Informatics Decis. Mak., 2016)

A Scalable Approach to Federating Distributed Data: The Avec® Platform. - Philip R. O. Payne; Mark Vance; Peter J. Embí (AMIA, 2017)

Retrospective Analysis of EHR and Administrative Data for Drug Repurposing Hypothesis Evaluation in Melanoma. - Kelly Regan; Jihyung Kil; Dongjo Ban; Gregg M. Gascon; Philip R. O. Payne (CRI, 2017)

Open Data for Discovery Science. - Philip R. O. Payne; Kun Huang 001; Nigam H. Shah; Jessica D. Tenenbaum (PSB, 2017)

MD-Miner: a network-based approach for personalized drug repositioning. - Haoyang Wu; Elise Miller; Denethi Wijegunawardana; Kelly Regan; Philip R. O. Payne; Fuhai Li 001 (BMC Syst. Biol., 2017)

Panel: Collaborative Science Within Academic Medical Centers: Opportunities and Challenges for Informatics. - Justin Starren; William R. Hersh; Christopher Longhurst; Philip R. O. Payne (AMIA, 2018)

Comparison of Electric Wheelchair Control Systems in a Virtual Environment. - Philip R. O. Payne; Erika Sanchez-Velazquez (CEEC, 2018)

Session introduction. - Philip R. O. Payne; Nigam H. Shah; Jessica D. Tenenbaum; Lara M. Mangravite (PSB, 2018)

The diversity and disparity in biomedical informatics (DDBI) workshop. - William M. Southerland; S. Joshua Swamidass; Philip R. O. Payne; Laura K. Wiley; ClarLynda R. Williams-DeVane (PSB, 2018)

Diffusion mapping of drug targets on disease signaling network elements reveals drug combination strategies. - Jielin Xu; Kelly Regan-Fendt; Siyuan Deng; William E. Carson III; Philip R. O. Payne; Fuhai Li 001 (PSB, 2018)

Synergistic Drug Combination Prediction by Integrating Multi-omics Data in Deep Learning Models. - Tianyu Zhang; Liwei Zhang; Philip R. O. Payne; Fuhai Li 001 (CoRR, 2018)

Foundations for Studying Clinical Workflow: Development of a Composite Inter-Observer Reliability Assessment for Workflow Time Studies. - Marcelo A. Lopetegui; Po-Yin Yen; Philip R. O. Payne; Peter J. Embí (AMIA, 2019)

Informatics-Enabled Learning Health Systems: Strategies for Success from Four Academic Medical Centers. - Eric G. Poon; Charles P. Friedman; Philip R. O. Payne; Michael J. Pencina; Kevin B. Johnson (AMIA, 2019)

CytoGPS: a web-enabled karyotype analysis tool for cytogenetics. - Zachary B. Abrams; Lin Zhang; Lynne V. Abruzzo; Nyla A. Heerema; Suli Li; Tom Dillon; Ricky Rodriguez; Kevin R. Coombes; Philip R. O. Payne (Bioinform., 2019)

A protocol to evaluate RNA sequencing normalization methods. - Zachary B. Abrams; Travis S. Johnson; Kun Huang 001; Philip R. O. Payne; Kevin R. Coombes (BMC Bioinform., 2019)

Predicting Tumor Cell Response to Synergistic Drug Combinations Using a Novel Simplified Deep Learning Model. - Heming Zhang 002; Jiarui Feng; Amanda Zeng; Philip R. O. Payne; Fuhai Li 001 (AMIA, 2020)

Using REDCap and Apple ResearchKit to integrate patient questionnaires and clinical decision support into the electronic health record to improve sexually transmitted infection testing in the emergency department. - Fahd A. Ahmad; Philip R. O. Payne; Ian Lackey; Rachel Komeshak; Kenneth Kenney; Brianna Magnusen; Christopher Metts; Thomas Bailey (J. Am. Medical Informatics Assoc., 2020)

When past is not a prologue: Adapting informatics practice during a pandemic. - Thomas George Kannampallil; Randi E. Foraker; Albert M. Lai; Keith F. Woeltje; Philip R. O. Payne (J. Am. Medical Informatics Assoc., 2020)

Language matters: precision health as a cross-cutting care, research and policy agenda. - Philip R. O. Payne; Don E. Detmer (J. Am. Medical Informatics Assoc., 2020)

Cognitive plausibility in voice-based AI health counselors. - Thomas George Kannampallil; Joshua M. Smyth; Steve Jones 001; Philip R. O. Payne; Jun Ma (npj Digit. Medicine, 2020)

Use of Healthcare Information Technology and Data Platforms to Inform Pandemic Response: Perspectives at the Intersection of Academic Healthcare Provider Organizations and Industry Partners. - Atul J. Butte; Christopher A. Longhurst; Amy Abernethy; Gretchen P. Jackson; Philip R. O. Payne (AMIA, 2021)

Public Health Informatics in a Global Pandemic: In the COVID response trenches. - Jessica D. Tenenbaum; Theresa Cullen; Indra Neil Sarkar; Philip R. O. Payne; Brian E. Dixon (AMIA, 2021)

Multi-horizon prediction for extracorporeal support in COVID-19 patients. - Bing Xue 003; Neel Shah; Hanqing Yang 005; Charles Ziegenbein; Thomas George Kannampallil; Philip R. O. Payne; Chenyang Lu 001; Ahmed Sameh Said (AMIA, 2021)

CACSE: Context Aware Clustering of Stellar Evolution. - Xu Teng; Adam Corpstein; Joel Holm; Willis Knox; Becker Mathie; Philip R. O. Payne; Ethan Vander Wiel; Prabin Giri; Goce Trajcevski; Aaron Dotter; Jeff J. Andrews; Scott Coughlin; et al. (SSTD, 2021)

Pattern recognition in lymphoid malignancies using CytoGPS and Mercator. - Zachary B. Abrams; Dwayne G. Tally; Lin Zhang; Caitlin E. Coombes; Philip R. O. Payne; Lynne V. Abruzzo; Kevin R. Coombes (BMC Bioinform., 2021)

Machine learning for modeling the progression of Alzheimer disease dementia using clinical data: a systematic literature review. - Sayantan Kumar; Inez Y. Oh; Suzanne E. Schindler; Albert M. Lai; Philip R. O. Payne; Aditi Gupta (CoRR, 2021)

Self-explaining Neural Network with Plausible Explanations. - Sayantan Kumar; Sean C. Yu; Andrew P. Michelson; Philip R. O. Payne (CoRR, 2021)

Ten principles for data sharing and commercialization. - Curtis L. Cole; Soumitra Sengupta; Sarah Collins Rossetti; David K. Vawdrey; Michael Halaas; Thomas M. Maddox; Geoff Gordon; Trushna Dave; Philip R. O. Payne; Andrew E. Williams; Deborah Estrin (J. Am. Medical Informatics Assoc., 2021)

The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. - Melissa A. Haendel; Christopher G. Chute; Tellen D. Bennett; David A. Eichmann; Justin Guinney; Warren A. Kibbe; Philip R. O. Payne; Emily R. Pfaff; Peter N. Robinson; Joel H. Saltz; Heidi Spratt; Christine Suver; et al. (J. Am. Medical Informatics Assoc., 2021)

Conceptual considerations for using EHR-based activity logs to measure clinician burnout and its effects. - Thomas George Kannampallil; Joanna Abraham; Sunny S. Lou; Philip R. O. Payne (J. Am. Medical Informatics Assoc., 2021)

Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. - Subha Madhavan; Lisa Bastarache; Jeffrey S. Brown; Atul J. Butte; David A. Dorr; Peter J. Embí; Charles P. Friedman; Kevin B. Johnson; Jason H. Moore; Isaac S. Kohane; Philip R. O. Payne; Jessica D. Tenenbaum; et al. (J. Am. Medical Informatics Assoc., 2021)

A retrospective look at the predictions and recommendations from the 2009 AMIA policy meeting: did we see EHR-related clinician burnout coming? - Justin B. Starren; William M. Tierney; Marc S. Williams; Paul C. Tang; Charlene R. Weir; Ross Koppel; Philip R. O. Payne; George Hripcsak; Don E. Detmer (J. Am. Medical Informatics Assoc., 2021)

Computational analysis to repurpose drugs for COVID-19 based on transcriptional response of host cells to SARS-CoV-2. - Fuhai Li 001; Andrew P. Michelson; Randi E. Foraker; Ming Zhan; Philip R. O. Payne (BMC Medical Informatics Decis. Mak., 2021)

Effect of Patient Switching on EHR-based Workload and Wrong-Patient Errors. - Sunny S. Lou; Seunghwan Kim; Derek Harford; Benjamin C. Warner; Philip R. O. Payne; Joanna Abraham; Thomas George Kannampallil (AMIA, 2022)

Self-explaining neural network with concept-based explanations for ICU mortality prediction. - Sayantan Kumar; Sean C. Yu; Thomas George Kannampallil; Zachary B. Abrams; Andrew P. Michelson; Philip R. O. Payne (BCB, 2022)

Interpreting mechanism of Synergism of drug combinations using attention based hierarchical graph pooling. - Zehao Dong; Yixin Chen 001; Philip R. O. Payne; Fuhai Li 001 (CoRR, 2022)

Sepsis Prediction for the General Ward Setting. - Sean C. Yu; Aditi Gupta; Kevin D. Betthauser; Patrick G. Lyons; Albert M. Lai; Marin Kollef; Philip R. O. Payne; Andrew P. Michelson (Frontiers Digit. Health, 2022)

Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). - Jason A. Thomas; Randi E. Foraker; Noa Zamstein; Jon D. Morrow; Philip R. O. Payne; Adam B. Wilcox; Melissa A. Haendel; Christopher G. Chute; Kenneth R. Gersing; Anita Walden; Tellen D. Bennett; David A. Eichmann; et al. (J. Am. Medical Informatics Assoc., 2022)

Respiratory support status from EHR data for adult population: classification, heuristics, and usage in predictive modeling. - Sean C. Yu; Mackenzie R. Hofford; Albert M. Lai; Marin Kollef; Philip R. O. Payne; Andrew P. Michelson (J. Am. Medical Informatics Assoc., 2022)

Assisting Clinical Decisions for Scarcely Available Treatment via Disentangled Latent Representation. - Bing Xue 003; Ahmed Sameh Said; Ziqi Xu 002; Hanyang Liu; Neel Shah; Hanqing Yang 005; Philip R. O. Payne; Chenyang Lu 001 (KDD, 2023)

Normative modeling using multimodal variational autoencoders to identify abnormal brain volume deviations in Alzheimer's disease. - Sayantan Kumar; Philip R. O. Payne; Aristeidis Sotiras (Computer-Aided Diagnosis, 2023)

Universal Normalization Enhanced Graph Representation Learning for Gene Network Prediction. - Zehao Dong; Muhan Zhang; Qihang Zhao; Philip R. O. Payne; Michael A. Province; Carlos Cruchaga; Tianyu Zhao; Yixin Chen 001; Fuhai Li 001 (CoRR, 2023)

Multi-horizon predictive models for guiding extracorporeal resource allocation in critically ill COVID-19 patients. - Bing Xue 003; Neel Shah; Hanqing Yang 005; Thomas George Kannampallil; Philip Richard Orrin Payne; Chenyang Lu 001; Ahmed Sameh Said (J. Am. Medical Informatics Assoc., 2023)

Electronic health record data quality assessment and tools: a systematic review. - Abigail E. Lewis; Nicole Gray Weiskopf; Zachary B. Abrams; Randi E. Foraker; Albert M. Lai; Philip R. O. Payne; Aditi Gupta (J. Am. Medical Informatics Assoc., 2023)

Rethinking the Power of Graph Canonization in Graph Representation Learning with Stability. - Zehao Dong; Muhan Zhang; Philip R. O. Payne; Michael A. Province; Carlos Cruchaga; Tianyu Zhao; Fuhai Li 001; Yixin Chen 001 (ICLR, 2024)

Developing Multi-Disorder Voice Protocols: A team science approach involving clinical expertise, bioethics, standards, and DEI. - Anaïs Rameau; Satrajit Ghosh; Alexandros Sigaras; Olivier Elemento; Jean-Christophe Bélisle-Pipon; Vardit Ravitsky; Maria Powell; Alistair Johnson; David Dorr; Philip R. O. Payne; Micah Boyer; Stephanie Watts; et al. (INTERSPEECH, 2024)

Improving Normative Modeling for Multi-Modal Neuroimaging Data Using Mixture-of-Product-of-Experts Variational Autoencoders. - Sayantan Kumar; Philip R. O. Payne; Aristeidis Sotiras (ISBI, 2024)

Highly Accurate Disease Diagnosis and Highly Reproducible Biomarker Identification with PathFormer. - Zehao Dong; Qihang Zhao; Philip R. O. Payne; Michael A. Province; Carlos Cruchaga; Muhan Zhang; Tianyu Zhao; Yixin Chen 001; Fuhai Li 001 (CoRR, 2024)

HiMAL: A Multimodal Hierarchical Multi-task Auxiliary Learning framework for predicting and explaining Alzheimer disease progression. - Sayantan Kumar; Sean C. Yu; Andrew P. Michelson; Thomas George Kannampallil; Philip R. O. Payne (CoRR, 2024)

Analysing heterogeneity in Alzheimer Disease using multimodal normative modelling on ATN biomarkers. - Sayantan Kumar; Thomas Earnest; Braden Yang; Deydeep Kothapalli; Tammie L. S. Benzinger; Brian A. Gordon; Philip R. O. Payne; Aristeidis Sotiras (CoRR, 2024)

Real world performance of the 21st Century Cures Act population-level application programming interface. - James R. Jones; Daniel Gottlieb 001; Andrew J. McMurry; Ashish Atreja; Pankaja M. Desai; Brian E. Dixon; Philip R. O. Payne; Anil J. Saldanha; Prabhu R. V. Shankar; Yauheni Solad; Adam B. Wilcox; Momeena S. Ali; et al. (J. Am. Medical Informatics Assoc., 2024)

Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence. - Andrew J. McMurry; Daniel Gottlieb 001; Timothy A. Miller; James R. Jones; Ashish Atreja; Jennifer Crago; Pankaja M. Desai; Brian E. Dixon; Matthew Garber; Vladimir Ignatov; Lyndsey A Kirchner; Philip R. O. Payne; et al. (J. Am. Medical Informatics Assoc., 2024)

sc2MeNetDrug: A computational tool to uncover inter-cell signaling targets and identify relevant drugs based on single cell RNA-seq data. - Jiarui Feng; S. Peter Goedegebuure; Amanda Zeng; Ye Bi; Ting Wang; Philip R. O. Payne; Li Ding; David DeNardo; William Hawkins 003; Ryan C. Fields; Fuhai Li 001 (PLoS Comput. Biol., 2024)

Collaborative Resource for Intensive care Translational science, Informatics, Comprehensive Analytics, and Learning (CRITICAL). - Yuan Luo 001; Luke V. Rasmussen; Andrew Williams 005; Jared Houghtaling; Andrew P. Michelson; Philip R. O. Payne; James J. Cimino; John D. Osborne; Prasanth Nannapaneni; Yikuan Li; Saki Amagai; Meghan Hutch; et al. (Zenodo, 2024)

Toward an artificial intelligence code of conduct for health and healthcare: implications for the biomedical informatics community. - Philip R. O. Payne; Kevin B. Johnson; Thomas M. Maddox; Peter J. Embí; Kenneth D. Mandl; Deven McGraw; Suchi Saria; Laura Adams (J. Am. Medical Informatics Assoc., 2025)

National COVID Cohort Collaborative data enhancements: a path for expanding common data models. - Kellie M. Walters; Marshall Clark; Sofia Dard; Stephanie S. Hong; Elizabeth Kelly; Kristin Kostka; Adam M. Lee; Robert T. Miller; Michele Morris; Matvey B. Palchuk; Emily R. Pfaff; Adam B. Wilcox; et al. (J. Am. Medical Informatics Assoc., 2025)

Large Language Models Meet Graph Neural Networks for Text-Numeric Graph Reasoning. - Haoran Song; Jiarui Feng; Guangfu Li; Michael A. Province; Philip R. O. Payne; Yixin Chen 001; Fuhai Li 001 (CoRR, 2025)

KoGNER: A Novel Framework for Knowledge Graph Distillation on Biomedical Named Entity Recognition. - Heming Zhang 002; Wenyu Li; Di Huang; Yinjie Tang; Yixin Chen 001; Philip R. O. Payne; Fuhai Li 001 (CoRR, 2025)

OmniCellTOSG: The First Cell Text-Omic Signaling Graphs Dataset for Joint LLM and GNN Modeling. - Heming Zhang 002; Tim Xu; Dekang Cao; Shunning Liang; Lars Schimmelpfennig; Levi Kaster; Di Huang; Carlos Cruchaga; Guangfu Li; Michael A. Province; Yixin Chen 001; Philip R. O. Payne; et al. (CoRR, 2025)