Improved ontology for eukaryotic single-exon coding sequences in biological databases. - Roddy Jorquera; Carolina González; Philip T. L. C. Clausen; Bent Petersen; David S. Holmes (Database J. Biol. Databases Curation, 2018)

Rapid and precise alignment of raw reads against redundant databases with KMA. - Philip T. L. C. Clausen; Frank Aarestrup; Ole Lund (BMC Bioinform., 2018)

SinEx DB 2.0 update 2020: database for eukaryotic single-exon coding sequences. - Roddy Jorquera; Carolina González; Philip T. L. C. Clausen; Bent Petersen; David S. Holmes (Database J. Biol. Databases Curation, 2021)

Automated download and clean-up of family-specific databases for kmer-based virus identification. - Rosa L. Allesøe; Camilla K. Lemvigh; My V. T. Phan; Philip T. L. C. Clausen; Alfred F. Florensa; Marion Koopmans; Ole Lund; Matthew Cotten (Bioinform., 2021)

Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining. - Philip T. L. C. Clausen (Bioinform., 2023)

ARGprofiler - a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets. - Hannah-Marie Martiny; Nikiforos Pyrounakis; Thomas Nordahl Petersen; Oksana Lukjancenko; Frank Aarestrup; Philip T. L. C. Clausen; Patrick Munk (Bioinform., 2024)