Functional overlap of the Arabidopsis leaf and root microbiota. - Yang Bai 003; Daniel B. Müller; Girish Srinivas; Ruben Garrido-Oter; Eva Potthoff; Matthias Rott; Nina Dombrowski; Philipp C. Münch; Stijn Spaepen; Mitja Remus-Emsermann; Bruno Hüttel; Alice C. McHardy; et al. (Nat., 2015)

EDEN: evolutionary dynamics within environments. - Philipp C. Münch; Bärbel Stecher; Alice C. McHardy (Bioinform., 2017)

DiTaxa: nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detection. - Ehsaneddin Asgari; Philipp C. Münch; Till R. Lesker; Alice C. McHardy; Mohammad R. K. Mofrad (Bioinform., 2019)

Evaluating assembly and variant calling software for strain-resolved analysis of large DNA viruses. - Zhi-Luo Deng; Akshay Dhingra; Adrian Fritz; Jasper Götting; Philipp C. Münch; Lars Steinbrück; Thomas Friedrich Schulz; Tina Ganzenmüller; Alice C. McHardy (Briefings Bioinform., 2021)

Neural Architecture Search for Genomic Sequence Data. - Amadeu Scheppach; Hüseyin Anil Gündüz; Emilio Dorigatti; Philipp C. Münch; Alice C. McHardy; Bernd Bischl; Mina Rezaei; Martin Binder (CIBCB, 2023)

Assessing computational predictions of antimicrobial resistance phenotypes from microbial genomes. - Kaixin Hu; Fernando Meyer; Zhi-Luo Deng; Ehsaneddin Asgari; Tzu-Hao Kuo; Philipp C. Münch; Alice C. McHardy (Briefings Bioinform., 2024)