TopFIND 2.0 - linking protein termini with proteolytic processing and modifications altering protein function. - Philipp F. Lange; Pitter F. Huesgen; Christopher M. Overall (Nucleic Acids Res., 2012)

Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events. - Nikolaus Fortelny; Sharon Yang; Paul Pavlidis; Philipp F. Lange; Christopher M. Overall (Nucleic Acids Res., 2015)

SQuAPP - simple quantitative analysis of proteins and PTMs. - Enes K. Ergin; Anuli C. Uzozie; Siyuan Chen; Ye Su; Philipp F. Lange (Bioinform., 2022)