FUNC: a package for detecting significant associations between gene sets and ontological annotations. - Kay Prüfer; Bjoern Muetzel; Hong Hai Do; Gunter Weiss; Philipp Khaitovich; Erhard Rahm; Svante Pääbo; Michael Lachmann; Wolfgang Enard (BMC Bioinform., 2007)

The effects of probe binding affinity differences on gene expression measurements and how to deal with them. - Michael Dannemann; Anna Lorenc; Ines Hellmann; Philipp Khaitovich; Michael Lachmann (Bioinform., 2009)

Evidence for human microRNA-offset RNAs in small RNA sequencing data. - David Langenberger; Clara Bermudez-Santana; Jana Hertel; Steve Hoffmann; Philipp Khaitovich; Peter F. Stadler (Bioinform., 2009)

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures. - Steve Hoffmann; Christian Otto; Stefan Kurtz; Cynthia M. Sharma; Philipp Khaitovich; Jörg Vogel 002; Peter F. Stadler; Jörg Hackermüller (PLoS Comput. Biol., 2009)

Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq. - Augix Guohua Xu; Liu He; Zhongshan Li; Ying Xu; Mingfeng Li; Xing Fu; Zheng Yan; Yuan Yuan; Corinna Menzel; Na Li; Mehmet Somel; Hao Hu; et al. (PLoS Comput. Biol., 2010)

Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series. - Yuan Yuan; Yi-Ping Phoebe Chen; Shengyu Ni; Augix Guohua Xu; Lin Tang; Martin Vingron; Mehmet Somel; Philipp Khaitovich (BMC Bioinform., 2011)