Conservation of protein-protein interactions among Ascomycota species. - Philipp Pagel; Hans-Werner Mewes; Dmitrij Frishman (German Conference on Bioinformatics, 2003)

MIPS: analysis and annotation of proteins from whole genomes. - Hans-Werner Mewes; Clara Amid; Roland Arnold; Dmitrij Frishman; Ulrich Güldener; Gertrud Mannhaupt; Martin Münsterkötter; Philipp Pagel; Normann Strack; Volker Stümpflen; Jens Warfsmann; Andreas Ruepp (Nucleic Acids Res., 2004)

The MIPS mammalian protein?Cprotein interaction database. - Philipp Pagel; Stefan Kovac; Matthias Oesterheld; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Pekka Mark; Volker Stümpflen; Hans-Werner Mewes; Andreas Ruepp; Dmitrij Frishman (Bioinform., 2005)

The DIMA web resource - exploring the protein domain network. - Philipp Pagel; Matthias Oesterheld; Volker Stümpflen; Dmitrij Frishman (Bioinform., 2006)

MPact: the MIPS protein interaction resource on yeast. - Ulrich Güldener; Martin Münsterkötter; Matthias Oesterheld; Philipp Pagel; Andreas Ruepp; Hans-Werner Mewes; Volker Stümpflen (Nucleic Acids Res., 2006)

MIPS: analysis and annotation of proteins from whole genomes in 2005. - Hans-Werner Mewes; Dmitrij Frishman; Klaus F. X. Mayer; Martin Münsterkötter; Octave Noubibou; Philipp Pagel; Thomas Rattei; Matthias Oesterheld; Andreas Ruepp; Volker Stümpflen (Nucleic Acids Res., 2006)

The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context. - Andreas Ruepp; Octave Noubibou Doudieu; Jos van den Oever; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Gisela Fobo; Goar Frishman; Corinna Montrone; Christine Skornia; Steffi Wanka; Thomas Rattei; Philipp Pagel; et al. (Nucleic Acids Res., 2006)

Mining expression-dependent modules in the human interaction network. - Elisabeth Georgii; Sabine Dietmann; Takeaki Uno; Philipp Pagel; Koji Tsuda (BMC Bioinform., 2007)

DIMA 2.0 - predicted and known domain interactions. - Philipp Pagel; Matthias Oesterheld; Oksana Tovstukhina; Normann Strack; Volker Stümpflen; Dmitrij Frishman (Nucleic Acids Res., 2008)

Enumeration of condition-dependent dense modules in protein interaction networks. - Elisabeth Georgii; Sabine Dietmann; Takeaki Uno; Philipp Pagel; Koji Tsuda (Bioinform., 2009)

The Negatome database: a reference set of non-interacting protein pairs. - Pawel Smialowski; Philipp Pagel; Philip Wong; Barbara Brauner; Irmtraud Dunger; Gisela Fobo; Goar Frishman; Corinna Montrone; Thomas Rattei; Dmitrij Frishman; Andreas Ruepp (Nucleic Acids Res., 2010)

Correlated Mutations: A Hallmark of Phenotypic Amino Acid Substitutions. - Andreas Kowarsch; Angelika Fuchs; Dmitrij Frishman; Philipp Pagel (PLoS Comput. Biol., 2010)

DIMA 3.0: Domain Interaction Map. - Qibin Luo; Philipp Pagel; Baiba Vilne; Dmitrij Frishman (Nucleic Acids Res., 2011)

Self-interaction of transmembrane helices representing pre-clusters from the human single-span membrane proteins. - Jan Kirrbach; Miriam Krugliak; Christian L. Ried; Philipp Pagel; Isaiah T. Arkin; Dieter Langosch (Bioinform., 2013)