MASon: Million Alignments in Seconds - A Platform Independent Pairwise Sequence Alignment Library for next Generation Sequencing Data. - Philipp Rescheneder; Arndt von Haeseler; Fritz J. Sedlazeck (BIOINFORMATICS, 2012)

NextGenMap: fast and accurate read mapping in highly polymorphic genomes. - Fritz J. Sedlazeck; Philipp Rescheneder; Arndt von Haeseler (Bioinform., 2013)

Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets. - Tobias Neumann; Veronika A. Herzog; Matthias Muhar; Arndt von Haeseler; Johannes Zuber; Stefan L. Ameres; Philipp Rescheneder (BMC Bioinform., 2019)