EpiToolKit - a web server for computational immunomics. - Magdalena Feldhahn; Philipp Thiel; Mathias M. Schuler; Nina Hillen; Stefan Stevanovic; Hans-Georg Rammensee; Oliver Kohlbacher (Nucleic Acids Res., 2008)

FRED - a framework for T-cell epitope detection. - Magdalena Feldhahn; Pierre Dönnes; Philipp Thiel; Oliver Kohlbacher (Bioinform., 2009)

Deterministic clustering of the available chemical space. - Philipp Thiel; Lisa Peltason; Christian Ottmann; Oliver Kohlbacher (J. Cheminformatics, 2013)

Blocked Inverted Indices for Exact Clustering of Large Chemical Spaces. - Philipp Thiel; Lisa Sach-Peltason; Christian Ottmann; Oliver Kohlbacher (J. Chem. Inf. Model., 2014)

ballaxy: web services for structural bioinformatics. - Anna Katharina Hildebrandt; Daniel Stöckel; Nina M. Fischer; Luis de la Garza; Jens Krüger 002; Stefan Nickels; Marc Röttig; Charlotta Schärfe; Marcel Schumann; Philipp Thiel; Hans-Peter Lenhof; Oliver Kohlbacher; et al. (Bioinform., 2015)

Computational Methods for the Modulation of Protein-Protein Interactions - Philipp Thiel (2015)

InVADo: Interactive Visual Analysis of Molecular Docking Data. - Marco Schäfer; Nicolas Brich; Jan Byska; Sérgio M. Marques; David Bednár; Philipp Thiel; Barbora Kozlíková; Michael Krone (IEEE Trans. Vis. Comput. Graph., 2024)