EUGÈNE'HOM: a generic similarity-based gene finder using multiple homologous sequences. - Sylvain Foissac; Philippe Bardou; Annick Moisan; Marie-Josée Cros; Thomas Schiex (Nucleic Acids Res., 2003)

jvenn: an interactive Venn diagram viewer. - Philippe Bardou; Jérôme Mariette; Frédéric Escudié; Christophe Djemiel; Christophe Klopp (BMC Bioinform., 2014)

The BioMart community portal: an innovative alternative to large, centralized data repositories. - Damian Smedley; Syed Haider; Steffen Durinck; Luca Pandini; Paolo Provero; James E. Allen; Olivier Arnaiz; Mohammad Hamza Awedh; Richard A. Baldock; Giulia Barbiera; Philippe Bardou; Tim Beck; et al. (Nucleic Acids Res., 2015)

Jflow: a workflow management system for web applications. - Jérôme Mariette; Frédéric Escudié; Philippe Bardou; Nabihoudine Ibouniyamine; Céline Noirot; Marie-Stéphane Trotard; Christine Gaspin; Christophe Klopp (Bioinform., 2016)

RumimiR: a detailed microRNA database focused on ruminant species. - Céline Bourdon; Philippe Bardou; Etienne Aujean; Sandrine Le Guillou; Gwenola Tosser-Klopp; Fabienne Le Provost (Database J. Biol. Databases Curation, 2019)

Finding and removing introns from RNA-Seq de novo assemblies with IntronSeeker. - Sarah Maman; Philippe Bardou; Emilien Lasguignes; Faustine Oudin; Floréal Cabanettes; Christophe Klopp (J. Open Source Softw., 2024)