Micado - a network-oriented database for microbial genomes. - V. Biaudet; Franck Samson; Philippe Bessières (Comput. Appl. Biosci., 1997)

Searching gene transfers on Bacillus subtilis using hidden Markov models. - Laurent Bize; Florence Muri; Franck Samson; François Rodolphe; S. Dusko Ehrlich; Bernard Prun; Philippe Bessières (RECOMB, 1999)

The Enhanced Microbial Genomes Library. - Guy Perrière; Philippe Bessières; Bernard Labedan (Nucleic Acids Res., 1999)

EMGLib: the Enhanced Microbial Genomes Library (update 2000). - Guy Perrière; Philippe Bessières; Bernard Labedan (Nucleic Acids Res., 2000)

Sentence Filtering for Information Extraction in Genomics, a Classification Problem. - Claire Nedellec; Mohamed Ould Abdel Vetah; Philippe Bessières (PKDD, 2001)

SPiD: a subtilis protein interaction database. - Mark Hoebeke; Hélène Chiapello; Philippe Noirot; Philippe Bessières (Bioinform., 2001)

MuGeN: Simultaneous Exploration of Multiple Genomes and Computer Analysis Results. - Mark Hoebeke; Pierre Nicolas; Philippe Bessières (Bioinform., 2003)

Event-Based Information Extraction for the Biomedical Domain: the Caderige Project. - Érick Alphonse; Sophie Aubin; Philippe Bessières; Gilles Bisson; Thierry Hamon; Sandrine Lagarrigue; Adeline Nazarenko; Alain-Pierre Manine; Claire Nédellec; Mohamed Ould Abdel Vetah; Thierry Poibeau; Davy Weissenbacher (NLPBA/BioNLP, 2004)

Extraction de processus fonctionnels en génétique des microbes à partir de résumés MEDLINE. - Alain Lelu; Philippe Bessières; Alain Zasadzinski; Dominique Besagni (EGC, 2004)

Information Extraction as an Ontology Population Task and Its Application to Genic Interactions. - Alain-Pierre Manine; Érick Alphonse; Philippe Bessières (ICTAI (2), 2008)

Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis. - Anne Goelzer; Fadia Bekkal-Brikci; Isabelle Martin-Verstraete; Philippe Noirot; Philippe Bessières; Stéphane Aymerich; Vincent Fromion (BMC Syst. Biol., 2008)

Transcriptional landscape estimation from tiling array data using a model of signal shift and drift. - Pierre Nicolas; Aurélie Leduc; Stéphane Robin; Simon Rasmussen; Hanne Jarmer; Philippe Bessières (Bioinform., 2009)

Learning ontological rules to extract multiple relations of genic interactions from text. - Alain-Pierre Manine; Érick Alphonse; Philippe Bessières (Int. J. Medical Informatics, 2009)

Extraction of Genic Interactions with the Recursive Logical Theory of an Ontology. - Alain-Pierre Manine; Érick Alphonse; Philippe Bessières (CICLing, 2010)

BioNLP Shared Task 2011 - Bacteria Biotope. - Robert Bossy; Julien Jourde; Philippe Bessières; Maarten van de Guchte; Claire Nédellec (BioNLP@ACL (Shared Task), 2011)

BioNLP Shared Task 2011 - Bacteria Gene Interactions and Renaming. - Julien Jourde; Alain-Pierre Manine; Philippe Veber; Karën Fort; Robert Bossy; Érick Alphonse; Philippe Bessières (BioNLP@ACL (Shared Task), 2011)

BioNLP Shared Task - The Bacteria Track. - Robert Bossy; Julien Jourde; Alain-Pierre Manine; Philippe Veber; Érick Alphonse; Maarten van de Guchte; Philippe Bessières; Claire Nedellec (BMC Bioinform., 2012)

BioNLP Shared Task 2013 - An overview of the Genic Regulation Network Task. - Robert Bossy; Philippe Bessières; Claire Nédellec (BioNLP@ACL (Shared Task), 2013)

BioNLP shared Task 2013 - An Overview of the Bacteria Biotope Task. - Robert Bossy; Wiktoria Golik; Zorana Ratkovic; Philippe Bessières; Claire Nédellec (BioNLP@ACL (Shared Task), 2013)

Overview of the gene regulation network and the bacteria biotope tasks in BioNLP'13 shared task. - Robert Bossy; Wiktoria Golik; Zorana Ratkovic; Dialekti Valsamou; Philippe Bessières; Claire Nédellec (BMC Bioinform., 2015)

Overview of the Regulatory Network of Plant Seed Development (SeeDev) Task at the BioNLP Shared Task 2016. - Estelle Chaix; Bertrand Dubreucq; Abdelhak Fatihi; Dialekti Valsamou; Robert Bossy; Mouhamadou Ba; Louise Deléger; Pierre Zweigenbaum; Philippe Bessières; Loïc Lepiniec; Claire Nedellec (BioNLP (Shared Task), 2016)

Overview of the Bacteria Biotope Task at BioNLP Shared Task 2016. - Louise Deléger; Robert Bossy; Estelle Chaix; Mouhamadou Ba; Arnaud Ferré; Philippe Bessières; Claire Nedellec (BioNLP (Shared Task), 2016)