Vibrational molecular force field of model compounds with biologic interest. II. Harmonic dynamics of both anomers of glucose in the crystalline state. - Manuel Dauchez; Philippe Derreumaux; Gérard Vergoten (J. Comput. Chem., 1993)

A Truncated Newton Minimizer Adapted for CHARMM and Biomolecular Applications. - Philippe Derreumaux; Guihua Zhang; Tamar Schlick; Bernard R. Brooks (J. Comput. Chem., 1994)

A Vibrational Molecular Force Field of Model Compounds with Biological Interest. IV. Parameters for the Different Glycosidic Linkages of Oligoaccharides. - Manuel Dauchez; Philippe Derreumaux; Philippe Lagenat; Gérard Vergoten (J. Comput. Chem., 1995)

Predicting helical hairpins from sequences by Monte Carlo simulations. - Philippe Derreumaux (J. Comput. Chem., 2000)

Improved greedy algorithm for protein structure reconstruction. - Pierre Tufféry; Frédéric Guyon; Philippe Derreumaux (J. Comput. Chem., 2005)

PEP-FOLD: an online resource for de novo peptide structure prediction. - Julien Maupetit; Philippe Derreumaux; Pierre Tufféry (Nucleic Acids Res., 2009)

A fast method for large-scale De Novo peptide and miniprotein structure prediction. - Julien Maupetit; Philippe Derreumaux; Pierre Tufféry (J. Comput. Chem., 2010)

A Multiscale Approach to Characterize the Early Aggregation Steps of the Amyloid-Forming Peptide GNNQQNY from the Yeast Prion Sup-35. - Jessica Nasica-Labouze; Massimiliano Meli; Philippe Derreumaux; Giorgio Colombo 001; Normand Mousseau (PLoS Comput. Biol., 2011)

PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides. - Pierre Thévenet; Yimin Shen; Julien Maupetit; Frédéric Guyon; Philippe Derreumaux; Pierre Tufféry (Nucleic Acids Res., 2012)

UnityMol: Interactive scientific visualization for integrative biology. - Sebastien Doutreligne; Tristan Cragnolini; Samuela Pasquali; Philippe Derreumaux; Marc Baaden (LDAV, 2014)

Epock: rapid analysis of protein pocket dynamics. - Benoist Laurent; Matthieu Chavent; Tristan Cragnolini; Anna Caroline E. Dahl; Samuela Pasquali; Philippe Derreumaux; Mark S. P. Sansom; Marc Baaden (Bioinform., 2015)

PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex. - Alexis Lamiable; Pierre Thévenet; Julien Rey; Marek Vavrusa; Philippe Derreumaux; Pierre Tufféry (Nucleic Acids Res., 2016)

Impact of the Astaxanthin, Betanin, and EGCG Compounds on Small Oligomers of Amyloid Aβ40 Peptide. - Huynh Minh Hung; Minh Tho Nguyen; Phuong-Thao Tran; Vi Khanh Truong; James Chapman 004; Le Huu Quynh Anh; Philippe Derreumaux; Van V. Vu; Son Tung Ngo 002 (J. Chem. Inf. Model., 2020)

A refined pH-dependent coarse-grained model for peptide structure prediction in aqueous solution. - Pierre Tufféry; Philippe Derreumaux (Frontiers Bioinform., 2023)

PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution. - Julien Rey; Samuel Murail; Sjoerd Jacob de Vries; Philippe Derreumaux; Pierre Tufféry (Nucleic Acids Res., 2023)