FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform. - Philippe Gouret; Vérane Vitiello; Nathalie Balandraud; André Gilles; Pierre Pontarotti; Etienne G. J. Danchin (BMC Bioinform., 2005)

PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees. - Philippe Gouret; Julie Dawn Thompson; Pierre Pontarotti (BMC Bioinform., 2009)

CASSIOPE: An expert system for conserved regions searches. - Virginie Lopez Rascol; Anthony Levasseur; Olivier Chabrol; Simona Grusea; Philippe Gouret; Etienne G. J. Danchin; Pierre Pontarotti (BMC Bioinform., 2009)