Analysis of array CGH data: from signal ratio to gain and loss of DNA regions. - Philippe Hupé; Nicolas Stransky; Jean-Paul Thiery; François Radvanyi; Emmanuel Barillot (Bioinform., 2004)

VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles. - Philippe La Rosa; Eric Viara; Philippe Hupé; Gaëlle Pierron; Stéphane Liva; Pierre Neuvial; Isabel Brito 002; Séverine Lair; Nicolas Servant; Nicolas Robine; Elodie Manié; Caroline Brennetot; et al. (Bioinform., 2006)

Computation of recurrent minimal genomic alterations from array-CGH data. - Céline Rouveirol; Nicolas Stransky; Philippe Hupé; Philippe La Rosa; Eric Viara; Emmanuel Barillot; François Radvanyi (Bioinform., 2006)

Spatial normalization of array-CGH data. - Pierre Neuvial; Philippe Hupé; Isabel Brito 002; Stéphane Liva; Elodie Manié; Caroline Brennetot; François Radvanyi; Alain Aurias; Emmanuel Barillot (BMC Bioinform., 2006)

CAPweb: a bioinformatics CGH array Analysis Platform. - Stéphane Liva; Philippe Hupé; Pierre Neuvial; Isabel Brito 002; Eric Viara; Philippe La Rosa; Emmanuel Barillot (Nucleic Acids Res., 2006)

ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays. - Guillem Rigaill; Philippe Hupé; Anna Almeida; Philippe La Rosa; Jean-Philippe Meyniel; Charles Decraene; Emmanuel Barillot (Bioinform., 2008)

Biostatistical Algorithms for OMICS Data in oncology. Application to DNA copy number microarray Experiments. - Philippe Hupé (2008)

SMETHILLIUM: spatial normalization METHod for ILLumina InfinIUM HumanMethylation BeadChip. - Camille Sabbah; Gildas Mazo; Caroline Paccard; Fabien Reyal; Philippe Hupé (Bioinform., 2011)

Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data. - Valentina Boeva; Tatiana G. Popova; Maxime Lienard; Sebastien Toffoli; Maud Kamal; Christophe Le Tourneau; David Gentien; Nicolas Servant; Pierre Gestraud; Thomas Rio Frio; Philippe Hupé; Emmanuel Barillot; et al. (Bioinform., 2014)

QUARTIC: QUick pArallel algoRithms for high-Throughput sequencIng data proCessing. - Frédéric Jarlier; Nicolas Joly; Nicolas Fedy; Thomas Magalhaes; Leonor Sirotti; Paul Paganiban; Firmin Martin; Michael McManus; Philippe Hupé (F1000Research, 2020)

biogitflow: development workflow protocols for bioinformatics pipelines with git and GitLab. - Choumouss Kamoun; Julien Roméjon; Henri de Soyres; Apolline Gallois; Elodie Girard; Philippe Hupé (F1000Research, 2020)