A Comprehensive Benchmark of Kernel Methods to Extract Protein-Protein Interactions from Literature. - Domonkos Tikk; Philippe Thomas 002; Peter Palaga; Jörg Hakenberg; Ulf Leser (PLoS Comput. Biol., 2010)

Not all links are equal: Exploiting Dependency Types for the Extraction of Protein-Protein Interactions from Text. - Philippe Thomas 002; Stefan Pietschmann; Illés Solt; Domonkos Tikk; Ulf Leser (BioNLP@ACL, 2011)

BioCreative III interactive task: an overview. - Cecilia N. Arighi; Phoebe M. Roberts; Shashank Agarwal; Sanmitra Bhattacharya; Gianni Cesareni; Andrew Chatr-aryamontri; Simon Clematide; Pascale Gaudet; Michelle G. Giglio; Ian Harrow; Eva Huala; Martin Krallinger; et al. (BMC Bioinform., 2011)

Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers. - Philippe E. Thomas; Roman Klinger; Laura Inés Furlong; Martin Hofmann-Apitius; Christoph M. Friedrich (BMC Bioinform., 2011)

GeneView: a comprehensive semantic search engine for PubMed. - Philippe Thomas 002; Johannes Starlinger; Alexander Vowinkel; Sebastian Arzt; Ulf Leser (Nucleic Acids Res., 2012)

Experiences from Developing the Domain-Specific Entity Search Engine GeneView. - Philippe Thomas 002; Johannes Starlinger; Ulf Leser (BTW, 2013)

WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting. - Philippe Thomas 002; Mariana L. Neves; Tim Rocktäschel; Ulf Leser (SemEval@NAACL-HLT, 2013)

A detailed error analysis of 13 kernel methods for protein-protein interaction extraction. - Domonkos Tikk; Illés Solt; Philippe Thomas 002; Ulf Leser (BMC Bioinform., 2013)

Computer-assisted curation of a human regulatory core network from the biological literature. - Philippe Thomas 002; Pawel Durek; Illés Solt; Bertram Klinger; Franziska Witzel; Pascal Schulthess; Yvonne Mayer; Domonkos Tikk; Nils Blüthgen; Ulf Leser (Bioinform., 2015)

Robust relationship extraction in the biomedical domain. - Philippe Thomas 002 (2015)

Real-Time Discovery and Geospatial Visualization of Mobility and Industry Events from Large-Scale, Heterogeneous Data Streams. - Leonhard Hennig; Philippe Thomas 002; Renlong Ai; Johannes Kirschnick; He Wang; Jakob Pannier; Nora Zimmermann; Sven Schmeier; Feiyu Xu 001; Jan Ostwald; Hans Uszkoreit (ACL (System Demonstrations), 2016)

SETH detects and normalizes genetic variants in text. - Philippe Thomas 002; Tim Rocktäschel; Jörg Hakenberg; Yvonne Lichtblau; Ulf Leser (Bioinform., 2016)

Integrating 400 million variants from 80, 000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts. - Jörg Hakenberg; Wei-Yi Cheng; Philippe Thomas 002; Ying-Chih Wang; Andrew V. Uzilov; Rong Chen 006 (BMC Bioinform., 2016)

Common Round: Application of Language Technologies to Large-Scale Web Debates. - Hans Uszkoreit; Aleksandra Gabryszak; Leonhard Hennig; Jörg Steffen; Renlong Ai; Stephan Busemann; Jon Dehdari; Josef van Genabith; Georg Heigold; Nils Rethmeier; Raphael Rubino; Sven Schmeier; et al. (EACL (Software Demonstrations), 2017)

Detecting Named Entities and Relations in German Clinical Reports. - Roland Roller; Nils Rethmeier; Philippe Thomas 002; Marc Hübner; Hans Uszkoreit; Oliver Staeck; Klemens Budde; Fabian Halleck; Danilo Schmidt (GSCL, 2017)

Twitter Geolocation Prediction Using Neural Networks. - Philippe Thomas 002; Leonhard Hennig (GSCL, 2017)

Streaming Text Analytics for Real-Time Event Recognition. - Philippe Thomas 002; Johannes Kirschnick; Leonhard Hennig; Renlong Ai; Sven Schmeier; Holmer Hemsen; Feiyu Xu 001; Hans Uszkoreit (RANLP, 2017)

Findings of the WMT 2017 Biomedical Translation Shared Task. - Antonio Jimeno-Yepes; Aurélie Névéol; Mariana L. Neves; Karin Verspoor; Ondrej Bojar; Arthur Boyer; Cristian Grozea; Barry Haddow; Madeleine Kittner; Yvonne Lichtblau; Pavel Pecina; Roland Roller; et al. (WMT, 2017)

Clickbait Identification using Neural Networks. - Philippe Thomas 002 (CoRR, 2017)

A German Corpus for Fine-Grained Named Entity Recognition and Relation Extraction of Traffic and Industry Events. - Martin Schiersch; Veselina Mironova; Maximilian Schmitt; Philippe Thomas 002; Aleksandra Gabryszak; Leonhard Hennig (LREC, 2018)

Football and Beer - a Social Media Analysis on Twitter in Context of the FIFA Football World Cup 2018. - Roland Roller; Philippe Thomas 002; Sven Schmeier (SMM4H@EMNLP, 2018)

SIA: a scalable interoperable annotation server for biomedical named entities. - Johannes Kirschnick; Philippe Thomas 002; Roland Roller; Leonhard Hennig (J. Cheminformatics, 2018)

Graph-KD: Exploring Relational Information for Knowledge Discovery. - Roland Roller; Gaurav Vashisth; Philippe Thomas 002; He Wang; Michael Mikhailov; Mark Stevenson 001 (ISWC (Satellites), 2019)

Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages. - Rachel Bawden; Giorgio Maria Di Nunzio; Cristian Grozea; Inigo Jauregi Unanue; Antonio Jimeno-Yepes; Nancy Mah; David Martínez 001; Aurélie Névéol; Mariana L. Neves; Maite Oronoz; Olatz Perez-de-Viñaspre; Massimo Piccardi; et al. (WMT@EMNLP, 2020)

Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set. - Lana Yeganova; Dina Wiemann; Mariana L. Neves; Federica Vezzani; Amy Siu; Inigo Jauregi Unanue; Maite Oronoz; Nancy Mah; Aurélie Névéol; David Martínez 001; Rachel Bawden; Giorgio Maria Di Nunzio; et al. (WMT@EMNLP, 2021)

Cross-lingual Approaches for the Detection of Adverse Drug Reactions in German from a Patient's Perspective. - Lisa Raithel; Philippe Thomas 002; Roland Roller; Oliver Sapina; Sebastian Möller 001; Pierre Zweigenbaum (LREC, 2022)

Findings of the WMT 2022 Biomedical Translation Shared Task: Monolingual Clinical Case Reports. - Mariana Neves 002; Antonio Jimeno-Yepes; Amy Siu; Roland Roller; Philippe Thomas 002; Maika Vicente Navarro; Lana Yeganova; Dina Wiemann; Giorgio Maria Di Nunzio; Federica Vezzani; Christel Gérardin; Rachel Bawden; et al. (WMT, 2022)

MultiTACRED: A Multilingual Version of the TAC Relation Extraction Dataset. - Leonhard Hennig; Philippe Thomas 002; Sebastian Möller 001 (ACL (1), 2023)

Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System. - Mariana L. Neves; Antonio Jimeno-Yepes; Aurélie Névéol; Rachel Bawden; Giorgio Maria Di Nunzio; Roland Roller; Philippe Thomas 002; Federica Vezzani; Maika Vicente Navarro; Lana Yeganova; Dina Wiemann; Cristian Grozea (WMT, 2023)

Findings of the WMT 2024 Biomedical Translation Shared Task: Test Sets on Abstract Level. - Mariana L. Neves; Cristian Grozea; Philippe Thomas 002; Roland Roller; Rachel Bawden; Aurélie Névéol; Steffen Castle; Vanessa Bonato; Giorgio Maria Di Nunzio; Federica Vezzani; Maika Vicente Navarro; Lana Yeganova; et al. (WMT, 2024)