BCO App: tools for generating BioCompute Objects from next-generation sequencing workflows and computations. - Nan Xiao 002; Soner Koc; David Roberson; Phillip Brooks; Manisha Ray; Dennis A. Dean (F1000Research, 2020)

Bioinformatics tools developed to support BioCompute Objects. - Janisha A. Patel; Dennis A. Dean; Charles Hadley King; Nan Xiao 002; Soner Koc; Ekaterina Minina; Anton Golikov; Phillip Brooks; Robel Y. Kahsay; Rahi Navelkar; Manisha Ray; Dave Roberson; et al. (Database J. Biol. Databases Curation, 2021)

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets. - Luiz Irber; N. Tessa Pierce-Ward; Mohamed Abuelanin; Harriet Alexander; Abhishek Anant; Keya Barve; Colton Baumler; Olga B. Botvinnik; Phillip Brooks; Daniel Dsouza; Gautier Laurent; Mahmudur Rahman Hera; et al. (J. Open Source Softw., 2024)