Girth of pancake graphs. - Phillip E. C. Compeau (Discret. Appl. Math., 2011)

A Simplified View of DCJ-Indel Distance. - Phillip E. C. Compeau (WABI, 2012)

DCJ-Indel sorting revisited. - Phillip E. C. Compeau (Algorithms Mol. Biol., 2013)

A Generalized Cost Model for DCJ-Indel Sorting. - Phillip E. C. Compeau (WABI, 2014)

Life after MOOCs. - Phillip E. C. Compeau; Pavel A. Pevzner (Commun. ACM, 2015)

Establishing a computational biology flipped classroom. - Phillip E. C. Compeau (PLoS Comput. Biol., 2019)