Cancer genes discovery based on integtating transcriptomic data and the impact of gene length. - Pi-Jing Wei; Di Zhang 006; Chun-Hou Zheng 001; Junfeng Xia (BIBM, 2016)

Srrr-cluster: Using Sparse Reduced-Rank Regression to Optimize iCluster. - Shu-Guang Ge; Junfeng Xia; Pi-Jing Wei; Chun-Hou Zheng 001 (ICIC (3), 2016)

LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network. - Pi-Jing Wei; Di Zhang 006; Junfeng Xia; Chun-Hou Zheng 001 (BMC Bioinform., 2016)

DriverFinder: A Gene Length-Based Network Method to Identify Cancer Driver Genes. - Pi-Jing Wei; Di Zhang 006; Haitao Li 004; Junfeng Xia; Chun-Hou Zheng 001 (Complex., 2017)

Discovering Driver Mutation Profiles in Cancer with a Local Centrality Score. - Ying Hui; Pi-Jing Wei; Jun-Feng Xia; Hong-Bo Wang; Jing Wang 057; Chun-Hou Zheng 001 (ICIC (2), 2019)

Identification of driver genes based on gene mutational effects and network centrality. - Yun-Yun Tang; Pi-Jing Wei; Jian-ping Zhao 001; Junfeng Xia; Rui-Fen Cao; Chun-Hou Zheng 001 (BMC Bioinform., 2021)

Double matrix completion for circRNA-disease association prediction. - Zong-Lan Zuo; Rui-Fen Cao; Pi-Jing Wei; Jun-Feng Xia; Chun-Hou Zheng 001 (BMC Bioinform., 2021)

Prediction of microsatellite instability of colorectal cancer using multi-scale pathological images based on deep learning. - Ruifen Cao; Qingsong Gu; Dayu Tan; Pi-Jing Wei; Chunhou Zheng 001 (BIBM, 2022)

iPromoter-CLA: Identifying promoters and their strength by deep capsule networks with bidirectional long short-term memory. - Zhi-min Zhang; Jian-ping Zhao 001; Pi-Jing Wei; Chun-Hou Zheng 001 (Comput. Methods Programs Biomed., 2022)

A Hybrid Tourism Recommendation System Based on Multi-objective Evolutionary Algorithm and Re-ranking. - Ruifen Cao; Zijue Li; Pi-Jing Wei; Ye Tian 009; Chun-Hou Zheng 001 (ICIC (5), 2023)

Prediction of Cancer Driver Genes Based on Pyramidal Dynamic Mapping Algorithm. - Pi-Jing Wei; Shu-Li Zhou; Rui-Fen Cao; Yansen Su; Chun-Hou Zheng 001 (ICIC (3), 2023)

CNNGRN: A Convolutional Neural Network-Based Method for Gene Regulatory Network Inference From Bulk Time-Series Expression Data. - Zhen Gao; Jin Tang 001; Junfeng Xia; Chun-Hou Zheng 001; Pi-Jing Wei (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

FFMAVP: a new classifier based on feature fusion and multitask learning for identifying antiviral peptides and their subclasses. - Ruifen Cao; Weiling Hu; Pi-Jing Wei; Yun Ding; Yannan Bin; Chun-Hou Zheng 001 (Briefings Bioinform., 2023)

CFANet: Context Feature Fusion and Attention Mechanism Based Network for Small Target Segmentation in Medical Images. - Ruifen Cao; Long Ning; Chao Zhou; Pi-Jing Wei; Yun Ding; Dayu Tan; Chunhou Zheng 001 (Sensors, 2023)

DAMNet: A Network Based on Dual Attention and Multi-Resolution Inputs for the Segmentation of Thoracic and Abdominal Organs. - Ruifen Cao; Zeyu Kai; Qi Hu; Yun Ding; Pi-Jing Wei; Chunhou Zheng 001; Dayu Tan (BIBM, 2024)

DeepFGRN: inference of gene regulatory network with regulation type based on directed graph embedding. - Zhen Gao; Yansen Su; Junfeng Xia; Rui-Fen Cao; Yun Ding; Chun-Hou Zheng 001; Pi-Jing Wei (Briefings Bioinform., 2024)

Inference of gene regulatory networks based on directed graph convolutional networks. - Pi-Jing Wei; Ziqiang Guo; Zhen Gao; Zheng Ding; Rui-Fen Cao; Yansen Su; Chun-Hou Zheng 001 (Briefings Bioinform., 2024)

MEFFGRN: Matrix enhancement and feature fusion-based method for reconstructing the gene regulatory network of epithelioma papulosum cyprini cells by spring viremia of carp virus infection. - Pi-Jing Wei; Jin-Jin Bao; Zhen Gao; Jing-Yun Tan; Rui-Fen Cao; Yansen Su; Chun-Hou Zheng 001; Li Deng (Comput. Biol. Medicine, 2024)

DMFVAE: miRNA-disease associations prediction based on deep matrix factorization method with variational autoencoder. - Pi-Jing Wei; Qianqian Wang; Zhen Gao; Ruifen Cao; Chun-Hou Zheng 001 (Frontiers Comput. Sci., 2024)

AttentionGRN: a functional and directed graph transformer for gene regulatory network reconstruction from scRNA-seq data. - Zhen Gao; Yansen Su; Jin Tang 001; Huaiwan Jin; Yun Ding; Rui-Fen Cao; Pi-Jing Wei; Chun-Hou Zheng 001 (Briefings Bioinform., 2025)

GAEDGRN: reconstruction of gene regulatory networks based on gravity-inspired graph autoencoders. - Pi-Jing Wei; Huaiwan Jin; Zhen Gao; Yansen Su; Chun-Hou Zheng 001 (Briefings Bioinform., 2025)

PMMNet: A Dual Branch Fusion Network of Point Cloud and Multi-View for Intracranial Aneurysm Classification and Segmentation. - Ruifen Cao; Dongwei Zhang; Pi-Jing Wei; Yun Ding; Chun-Hou Zheng 001; Dayu Tan; Chao Zhou (IEEE J. Biomed. Health Informatics, 2025)