Extension and use of KMRCRelat algorithm for biological problems. - Nahla El Zant El Kadhi; Nabil El-Kadhi; Pierre-Antoine Gourraud (J. Comput. Methods Sci. Eng., 2006)

High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs. - Alexander T. Dilthey; Pierre-Antoine Gourraud; Alexander J. Mentzer; Nezih Cereb; Zamin Iqbal; Gil McVean (PLoS Comput. Biol., 2016)

SVM-Based Tool to Detect Patients with Multiple Sclerosis Using a Commercial EMG Sensor. - Konstantin Akhmadeev; Aya Houssein; Saïd Moussaoui; Einar A. Høgestøl; Ingerid Tutturen; Hanne F. Harbo; Steffan D. Bos-Haugen; Jennifer Graves; David-Axel Laplaud; Pierre-Antoine Gourraud (SAM, 2018)

Multiple hot-deck imputation for network inference from RNA sequencing data. - Alyssa Imbert; Armand Valsesia; Caroline Le Gall; Claudia Armenise; Gregory Lefebvre; Pierre-Antoine Gourraud; Nathalie Viguerie; Nathalie Villa-Vialaneix (Bioinform., 2018)

Distributed Contextualization of Biomedical Data: A Case Study in Precision Medicine. - Sirine Sayadi; Estelle Geffard; Mario Südholt; Nicolas Vince; Pierre-Antoine Gourraud (AICCSA, 2020)

Easy-HLA: a validated web application suite to reveal the full details of HLA typing. - Estelle Geffard; Sophie Limou; Alexandre Walencik; Michelle Daya; Harold Watson; Dara Torgerson; Kathleen C. Barnes; Anne Cesbron Gautier; Pierre-Antoine Gourraud; Nicolas Vince (Bioinform., 2020)

Secure Distribution of Factor Analysis of Mixed Data (FAMD) and Its Application to Personalized Medicine of Transplanted Patients. - Sirine Sayadi; Estelle Geffard; Mario Südholt; Nicolas Vince; Pierre-Antoine Gourraud (AINA (1), 2021)

Application of a novel Anonymization Method for Electrocardiogram data. - Zineb Bennis; Pierre-Antoine Gourraud (ArabWIC, 2021)

FrenchMedMCQA: A French Multiple-Choice Question Answering Dataset for Medical domain. - Yanis Labrak; Adrien Bazoge; Richard Dufour; Béatrice Daille; Pierre-Antoine Gourraud; Emmanuel Morin; Mickael Rouvier (LOUHI@EMNLP, 2022)

The Integration of Human Intelligence into Artificial Intelligence to Provide Medical Practice-Based Predictions. - Chadia Ed-Driouch; Pierre-Antoine Gourraud; Cédric Dumas; Franck Mars (HHAI, 2022)

L'intelligence hybride pour prédire l'évolution des maladies chroniques: Hybrid intelligence to predict chronic disease progression. - Chadia Ed-Driouch; Franck Mars; Pierre-Antoine Gourraud; Cédric Dumas (IHM (Adjunct), 2022)

Addressing the Challenges and Barriers to the Integration of Machine Learning into Clinical Practice: An Innovative Method to Hybrid Human-Machine Intelligence. - Chadia Ed-Driouch; Franck Mars; Pierre-Antoine Gourraud; Cédric Dumas (Sensors, 2022)

DrBERT: A Robust Pre-trained Model in French for Biomedical and Clinical domains. - Yanis Labrak; Adrien Bazoge; Richard Dufour; Mickael Rouvier; Emmanuel Morin; Béatrice Daille; Pierre-Antoine Gourraud (ACL (1), 2023)

DrBERT: Un modèle robuste pré-entraîné en français pour les domaines biomédical et clinique. - Yanis Labrak; Adrien Bazoge; Richard Dufour; Mickael Rouvier; Emmanuel Morin; Béatrice Daille; Pierre-Antoine Gourraud (CORIA-TALN (4), 2023)

Patient-centric synthetic data generation, no reason to risk re-identification in biomedical data analysis. - Morgan Guillaudeux; Olivia Rousseau; Julien Petot; Zineb Bennis; Charles-Axel Dein; Thomas Goronflot; Nicolas Vince; Sophie Limou; Matilde Karakachoff; Matthieu Wargny; Pierre-Antoine Gourraud (npj Digit. Medicine, 2023)

BioMistral: A Collection of Open-Source Pretrained Large Language Models for Medical Domains. - Yanis Labrak; Adrien Bazoge; Emmanuel Morin; Pierre-Antoine Gourraud; Mickael Rouvier; Richard Dufour (ACL (Findings), 2024)

DrBenchmark: A Large Language Understanding Evaluation Benchmark for French Biomedical Domain. - Yanis Labrak; Adrien Bazoge; Oumaima El Khettari; Mickael Rouvier; Pacôme Constant dit Beaufils; Natalia Grabar; Béatrice Daille; Solen Quiniou; Emmanuel Morin; Pierre-Antoine Gourraud; Richard Dufour (LREC/COLING, 2024)

The Ouest Data Hub: An Interregional Health Data Sharing Ecosystem for Research. - Marc Cuggia; Leslie Grammatico-Guillon; Pierre-Antoine Gourraud; Jean-Marie Chrétien; François Bocquet; Valentine Guiton; Eric Stindel (MIE, 2024)

Adaptation of Biomedical and Clinical Pretrained Models to French Long Documents: A Comparative Study. - Adrien Bazoge; Emmanuel Morin; Béatrice Daille; Pierre-Antoine Gourraud (CoRR, 2024)

Stochastic Mixing and Differential Privacy in Utility-Preserving Data Anonymization. - Alban-Félix Barreteau; Eric Le Carpentier; Olivier Regnier-Coudert; Saïd Moussaoui; Pierre-Antoine Gourraud (SSP, 2025)

Assessing large language models for acute heart failure classification and information extraction from French clinical notes. - Adrien Bazoge; Matthieu Wargny; Pacôme Constant dit Beaufils; Emmanuel Morin; Béatrice Daille; Pierre-Antoine Gourraud; Samy Hadjadj (Comput. Biol. Medicine, 2025)

Improving Social Determinants of Health Documentation in French EHRs Using Large Language Models. - Adrien Bazoge; Pacôme Constant dit Beaufils; Mohammed Hmitouch; Romain Bourcier; Emmanuel Morin; Richard Dufour; Béatrice Daille; Pierre-Antoine Gourraud; Matilde Karakachoff (CoRR, 2025)