Understanding and improving statistical models of protein sequences. (Comprendre et améliorer les modèles statistiques de séquences de protéines). - Pierre Barrat-Charlaix (2018)

Toward Inferring Potts Models for Phylogenetically Correlated Sequence Data. - Edwin Rodriguez Horta; Pierre Barrat-Charlaix; Martin Weigt (Entropy, 2019)

Sparse generative modeling of protein-sequence families. - Pierre Barrat-Charlaix; Anna Paola Muntoni; Kai Shimagaki; Martin Weigt; Francesco Zamponi (CoRR, 2020)

TreeKnit: Inferring ancestral reassortment graphs of influenza viruses. - Pierre Barrat-Charlaix; Timothy G. Vaughan; Richard A. Neher (PLoS Comput. Biol., 2022)