Identification of A Large-Scale Functional Network In Functional Magnetic Resonance Imaging. - Pierre Bellec; Guillaume Marrelec; Vincent Perlbarg; Saâd Jbabdi; Odile Jolivet; Mélanie Pélégrini-Issac; Habib Benali; Julien Doyon (ISBI, 2004)

A Level Set Method for Building Anatomical Connectivity Paths Between Brain Areas Using DTI. - Saâd Jbabdi; Pierre Bellec; Guillaume Marrelec; Habib Benali (ISBI, 2004)

Selection of Spatially Independent Components to Explain Functional Connectivity In fMRI. - Vincent Perlbarg; Pierre Bellec; Habib Benali; Guillaume Marrelec; Saâd Jbabdi (ISBI, 2004)

Correction of Structured Noise in fMRI Using Spatial Independent Component Analysis: Corsica. - Vincent Perlbarg; Pierre Bellec; Jean-Luc Anton; Habib Benali (ICASSP (5), 2006)

Identification of large-scale networks in the brain using fMRI. - Pierre Bellec; Vincent Perlbarg; Saâd Jbabdi; Mélanie Pélégrini-Issac; Jean-Luc Anton; Julien Doyon; Habib Benali (NeuroImage, 2006)

Accurate Anisotropic Fast Marching for Diffusion-Based Geodesic Tractography. - Saâd Jbabdi; Pierre Bellec; Roberto Toro; Jean Daunizeau; Mélanie Pélégrini-Issac; Habib Benali (Int. J. Biomed. Imaging, 2008)

Regions, systems, and the brain: Hierarchical measures of functional integration in fMRI. - Guillaume Marrelec; Pierre Bellec; Alexandre Krainik; Hugues Duffau; Mélanie Pélégrini-Issac; Stéphane Lehéricy; Habib Benali; Julien Doyon (Medical Image Anal., 2008)

Multi-level bootstrap analysis of stable clusters in resting-state fMRI. - Pierre Bellec; Pedro Rosa-Neto; Oliver C. Lyttelton; Habib Benali; Alan C. Evans (NeuroImage, 2010)

Global and System-Specific Resting-State fMRI Fluctuations Are Uncorrelated: Principal Component Analysis Reveals Anti-Correlated Networks. - Felix Carbonell; Pierre Bellec; Amir Shmuel (Brain Connect., 2011)

The pipeline system for Octave and Matlab (PSOM): a lightweight scripting framework and execution engine for scientific workflows. - Pierre Bellec; Sébastien Lavoie-Courchesne; Phil Dickinson; Jason P. Lerch; Alex P. Zijdenbos; Alan C. Evans (Frontiers Neuroinformatics, 2012)

A convergent functional architecture of the insula emerges across imaging modalities. - Clare Kelly; Roberto Toro; Adriana Di Martino; Christine L. Cox; Pierre Bellec; F. Xavier Castellanos; Michael P. Milham (NeuroImage, 2012)

Task-related BOLD responses and resting-state functional connectivity during physiological clamping of end-tidal CO2. - Cecile Madjar; Claudine Joëlle Gauthier; Pierre Bellec; Rasmus M. Birn; Jonathan C. W. Brooks; Richard D. Hoge (NeuroImage, 2012)

Resting state FDG-PET functional connectivity as an early biomarker of Alzheimer's disease using conjoint univariate and independent component analyses. - Paule-Joanne Toussaint; Vincent Perlbarg; Pierre Bellec; Serge Desarnaud; Lucette Lacomblez; Julien Doyon; Marie Odile Habert; Habib Benali (NeuroImage, 2012)

Mining the Hierarchy of Resting-State Brain Networks: Selection of Representative Clusters in a Multiscale Structure. - Pierre Bellec (PRNI, 2013)

Multiscale statistical testing for connectome-wide association studies in fMRI. - Pierre Bellec; Yassine Benhajali; Felix Carbonell; Christian Dansereau; Z. Shehzad; Geneviève Albouy; Maxime Pelland; R. Cameron Craddock; Olivier Collignon; Julien Doyon; Emmanuel Stip; Pierre Orban (CoRR, 2014)

Quantification of the impact of a confounding variable on functional connectivity confirms anti-correlated networks in the resting-state. - Felix Carbonell; Pierre Bellec; Amir Shmuel (NeuroImage, 2014)

Off-line consolidation of motor sequence learning results in greater integration within a cortico-striatal functional network. - Karen Debas; Julie Carrier; Marc Barakat; Guillaume Marrelec; Pierre Bellec; Abdallah Hadj Tahar; Avi Karni; Leslie G. Ungerleider; Habib Benali; Julien Doyon (NeuroImage, 2014)

A Bayesian alternative to mutual information for the hierarchical clustering of dependent random variables. - Guillaume Marrelec; Arnaud Messé; Pierre Bellec (CoRR, 2015)

Sharp oracle bounds for monotone and convex regression through aggregation. - Pierre C. Bellec; Alexandre B. Tsybakov (J. Mach. Learn. Res., 2015)

Impact of the resolution of brain parcels on connectome-wide association studies in fMRI. - Pierre Bellec; Yassine Benhajali; Felix Carbonell; Christian Dansereau; Geneviève Albouy; Maxime Pelland; R. Cameron Craddock; Olivier Collignon; Julien Doyon; Emmanuel Stip; Pierre Orban (NeuroImage, 2015)

Aggregation of supports along the Lasso path. - Pierre C. Bellec (COLT, 2016)

Simulation and Validation in Brain Image Analysis. - Jussi Tohka; Pierre Bellec; Christophe Grova; Anthonin Reilhac (Comput. Intell. Neurosci., 2016)

Statistical power and measurement bias in multisite resting-state fMRI connectivity. - Christian Dansereau; Yassine Benhajali; Céline Risterucci; Emilio Merlo Pich; Pierre Orban; Douglas Arnold; Pierre Bellec (CoRR, 2016)

A cross-modal, cross-species comparison of connectivity measures in the primate brain. - Andrew T. Reid; John D. Lewis; Gleb Bezgin; Budhachandra S. Khundrakpam; Simon B. Eickhoff; Anthony Randal McIntosh; Pierre Bellec; Alan C. Evans (NeuroImage, 2016)

Boutiques: a flexible framework for automated application integration in computing platforms. - Tristan Glatard; Gregory Kiar; Tristan Aumentado-Armstrong; Natacha Beck; Pierre Bellec; Rémi Bernard; Axel Bonnet; Sorina Camarasu-Pop; Frédéric Cervenansky; Samir Das; Rafael Ferreira da Silva; Guillaume Flandin; et al. (CoRR, 2017)

Software architectures to integrate workflow engines in science gateways. - Tristan Glatard; Marc-Etienne Rousseau; Sorina Camarasu-Pop; Reza Adalat; Natacha Beck; Samir Das; Rafael Ferreira da Silva; Najmeh Khalili-Mahani; Vladimir Korkhov; Pierre-Olivier Quirion; Pierre Rioux; Sílvia D. Olabarriaga; et al. (Future Gener. Comput. Syst., 2017)

Maximum Pseudolikelihood Estimation for Model-Based Clustering of Time Series Data. - Hien Duy Nguyen; Geoffrey J. McLachlan; Pierre Orban; Pierre Bellec; Andrew L. Janke (Neural Comput., 2017)

The Neuro Bureau ADHD-200 Preprocessed repository. - Pierre Bellec; Carlton Chu; François Chouinard-Decorte; Yassine Benhajali; Daniel S. Margulies; R. Cameron Craddock (NeuroImage, 2017)

Statistical power and prediction accuracy in multisite resting-state fMRI connectivity. - Christian Dansereau; Yassine Benhajali; Céline Risterucci; Emilio Merlo Pich; Pierre Orban; Douglas L. Arnold; Pierre Bellec (NeuroImage, 2017)

State-dependent modulation of functional connectivity in early blind individuals. - Maxime Pelland; Pierre Orban; Christian Dansereau; Franco Lepore; Pierre Bellec; Olivier Collignon (NeuroImage, 2017)

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. - Krzysztof J. Gorgolewski; Fidel Alfaro-Almagro; Tibor Auer; Pierre Bellec; Mihai Capota; M. Mallar Chakravarty; Nathan William Churchill; Alexander Li Cohen; R. Cameron Craddock; Gabriel A. Devenyi; Anders Eklund 002; Oscar Esteban; et al. (PLoS Comput. Biol., 2017)

Neuroimage special issue on brain segmentation and parcellation - Editorial. - R. Cameron Craddock; Pierre Bellec; Saâd Jbabdi (NeuroImage, 2018)

Detecting stable individual differences in the functional organization of the human basal ganglia. - Manuel Garcia-Garcia; Aki Nikolaidis; Pierre Bellec; R. Cameron Craddock; Brian Cheung; Francisco X. Castellanos; Michael P. Milham (NeuroImage, 2018)

First order expansion of convex regularized estimators. - Pierre C. Bellec; Arun K. Kuchibhotla (NeurIPS, 2019)

The Cost-free Nature of Optimally Tuning Tikhonov Regularizers and Other Ordered Smoothers. - Pierre Bellec; Dana Yang (ICML, 2020)

Asymptotic normality and confidence intervals for derivatives of 2-layers neural network in the random features model. - Yiwei Shen; Pierre C. Bellec (NeurIPS, 2020)

A Standardized Protocol for Efficient and Reliable Quality Control of Brain Registration in Functional MRI Studies. - Yassine Benhajali; AmanPreet Badhwar; Helen Spiers; Sebastian Urchs; Jonathan Ilan Armoza; Thomas Ong; Daniel Perusse; Pierre Bellec (Frontiers Neuroinformatics, 2020)

Multivariate consistency of resting-state fMRI connectivity maps acquired on a single individual over 2.5 years, 13 sites and 3 vendors. - AmanPreet Badhwar; Yannik Collin-Verreault; Pierre Orban; Sebastian Urchs; Isabelle Chouinard; Jacob Vogel; Olivier Potvin; Simon Duchesne; Pierre Bellec (NeuroImage, 2020)

Bagging improves reproducibility of functional parcellation of the human brain. - Aki Nikolaidis; Anibal Sólon Heinsfeld; Ting Xu 001; Pierre C. Bellec; Joshua T. Vogelstein; Michael P. Milham (NeuroImage, 2020)

Functional annotation of human cognitive states using deep graph convolution. - Yu Zhang 115; Loïc Tetrel; Bertrand Thirion; Pierre Bellec (NeuroImage, 2021)

On the open-source landscape of PLOS Computational Biology. - Mathieu Boudreau; Jean-Baptiste Poline; Pierre Bellec; Nikola Stikov (PLoS Comput. Biol., 2021)

Derivatives and residual distribution of regularized M-estimators with application to adaptive tuning. - Pierre C. Bellec; Yiwei Shen (COLT, 2022)

Neuroevolution of recurrent architectures on control tasks. - Maximilien Le Clei; Pierre Bellec (GECCO Companion, 2022)

Deep learning models of cognitive processes constrained by human brain connectomes. - Yu Zhang 115; Nicolas Farrugia; Pierre Bellec (Medical Image Anal., 2022)

Beyond advertising: New infrastructures for publishing integrated research objects. - Elizabeth Dupre; Chris Holdgraf; Agah Karakuzu; Loïc Tetrel; Pierre Bellec; Nikola Stikov; Jean-Baptiste Poline (PLoS Comput. Biol., 2022)

Generative Adversarial Neuroevolution for Control Behaviour Imitation. - Maximilien Le Clei; Pierre Bellec (GECCO Companion, 2023)

Multinomial Logistic Regression: Asymptotic Normality on Null Covariates in High-Dimensions. - Kai Tan; Pierre C. Bellec (NeurIPS, 2023)

The Canadian Open Neuroscience Platform - An open science framework for the neuroscience community. - Rachel J. Harding; Patrick Bermudez; Alexander Bernier; Michael J. S. Beauvais; Pierre Bellec; Sean L. Hill; Agah Karakuzu; Bartha M. Knoppers; Paul Pavlidis; Jean-Baptiste Poline; Jane Roskams; Nikola Stikov; et al. (PLoS Comput. Biol., 2023)

Analyses code for the validation study of the CNeuromod controller. - Yann Harel; André Cyr; Julie Boyle; Basile Pinsard; Jeremy Bernard; Marie-France Fourcade; Himanshu Aggarwal; Ana Fernanda Ponce; Bertrand Thirion; Karim Jerbi; Pierre Bellec (Zenodo, 2023)

A reproducible benchmark of resting-state fMRI denoising strategies using fMRIPrep and Nilearn. - Hao-Ting Wang; Steven L. Meisler; Hanad Sharmarke; Natasha Clarke; François Paugam; Nicolas Gensollen; Christopher J. Markiewicz; Bertrand Thirion; Pierre Bellec (Zenodo, 2023)

A reproducible benchmark of resting-state fMRI denoising strategies using fMRIPrep and Nilearn. - Hao-Ting Wang; Steven L. Meisler; Hanad Sharmarke; Natasha Clarke; François Paugam; Nicolas Gensollen; Christopher J. Markiewicz; Bertrand Thirion; Pierre Bellec (Zenodo, 2023)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexis Thual; Alisha Kodibagkar; Amadeus Kanaan; et al. (Zenodo, 2023)

Brain decoding of the Human Connectome Project tasks in a dense individual fMRI dataset. - Shima Rastegarnia; Marie St-Laurent; Elizabeth Dupre; Basile Pinsard; Pierre Bellec (NeuroImage, 2023)

Generational Information Transfer with Neuroevolution on Control Tasks. - Maximilien Le Clei; Stav Bar-Sheshet; Pierre Bellec (GECCO Companion, 2024)

Estimating Generalization Performance Along the Trajectory of Proximal SGD in Robust Regression. - Kai Tan; Pierre C. Bellec (NeurIPS, 2024)

Scaling up ridge regression for brain encoding in a massive individual fMRI dataset. - Sana Ahmadi; Pierre Bellec; Tristan Glatard (CoRR, 2024)

Uncertainty quantification for iterative algorithms in linear models with application to early stopping. - Pierre C. Bellec; Kai Tan (CoRR, 2024)

Training Compute-Optimal Vision Transformers for Brain Encoding. - Sana Ahmadi; François Paugam; Tristan Glatard; Pierre Bellec (CoRR, 2024)

Continuous evaluation of denoising strategies in resting-state fMRI connectivity using fMRIPrep and Nilearn. - Hao-Ting Wang; Steven L. Meisler; Hanad Sharmarke; Natasha Clarke; Nicolas Gensollen; Christopher J. Markiewicz; François Paugam; Bertrand Thirion; Pierre Bellec (PLoS Comput. Biol., 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexis Thual; Alisha Kodibagkar; Amadeus Kanaan; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexis Thual; Alisha Kodibagkar; Amadeus Kanaan; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2025)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2025)

A Numerical Variability Approach to Results Stability Tests and Its Application to Neuroimaging. - Yohan Chatelain; Loïc Tetrel; Christopher J. Markiewicz; Mathias Goncalves; Gregory Kiar; Oscar Esteban; Pierre Bellec; Tristan Glatard (IEEE Trans. Computers, 2025)